BAC Information

Click to search

BAC

Clone NameMSMg01-383J17
Chromosome13 (Build37)
Map Location 57,163,623 - 57,164,082
singlet/doubletsinglet
Overlap genenone
Upstream geneH2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7
Downstream geneLOC100040995, Spock1, Klhl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383J17.T7 (MSMg01no383_j17.b1)MSMg01-383J17.TJ (MSMg01no383_j17.g1)
ACCAG487237AG487238
length763776
length of high quality
(start - end)
480 (67 - 546)460 (70 - 529)
definitionCHROMAT_FILE: MSMg01no383_j17.b1 PHD_FILE: MSMg01no383_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:41 2005CHROMAT_FILE: MSMg01no383_j17.g1 PHD_FILE: MSMg01no383_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAGGTCCTCCTGTACCACGTCTGCCTGGATGCTGCCATGCTCACACCTTG
ATGATAATGGACTGAATCTCTAAACCTATAAGCCAGCCCCAATTAGATGT
TGTCCTTATAGGAGTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAA
CCCTAACTAAGACAATCACAGATATAAACTTTTTCTTTTTCTGTCCTGAG
GATTGAACCTGGGGCCTTTTGCATGCCAAGTAAGCGCTGTTCTACCATGG
GCTTCGCCTTTACCCTAGTCTTTGCTGTATCACCACCACCACCACCACCA
CCACCACCACCACCACCACCATTGTCAGGTCTGTACTCCAGACTAGAATT
CGTTATGTAGCCTGGATTGACTCTCTGTTCTCCTTCCTCAGCCTCTGGAG
TGCTGAGACTCCGGTCCGGCATACCATCCACCTCAACCTTCCATTTGCAT
TTTCTACAGAGATCTTCTTTATCCTTTGGCTTATGACGCATGACAGCAAC
TCTGGATCTTGGACAAAAGGGTGAATAGATTGTATGCCATTTAATGGATG
AATTGGCACCCAGCCGTTCTTTAGTGAGAAAAAAATGGGTGGCACCTTTA
AGGGTGGGTTTTAAAAGGCTGTTTTATTTGAAAACAAGGAAAAAAAAAAC
CCCCCGGGCTTCTCCTTTGGGGGTTGAAAAAGAAGTCCAAAAAACAAACT
TTCTTTTCCCCCC
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCTGTTATTTACCTTGGTCACATGTTTGAT
TACAGCAACAGAAAAGTAGTAAATATACTCCATTATTACAAAATGTGTCG
GTTATATTAAGCTTAACTAATATATGTATTCATCTAATAAGGTGATGGAT
TTCATGACTTTTTAACTCAAATATATTATATACTTTGACCATATTTACCT
CACATTACTCTCCTGTCTCACAATCAGTCACCTTCACCTGTCAGGACTAT
TCTTTTTCTATATTTATATATATTTTTTCCTTACATGTGTGCATGTGCAT
GCACGTGTATGTATACATTCTCTAAGTTCCATGTATGAGAGAAAAATATG
CATTTGTGTTCTTGCTTCTGTCTCATTTTGCTTAATAATATTCTCTGCTT
CCATGTCTTTCCCACAAATGGTTTAATTTTATTCATTATCATTATCAAAA
TAACTGTTACTTCACACCATTCTGTACTCCAAAAGGCTCCTAGTTCTTAA
GAAATAGTTTTATAAATATGTCTGGGAACTTAATGTCTTTCACCTTTGCT
GACTTANAATGTCAACTTCATATACTTGTACAGCAAGCCCTCTTTTCTTT
TCCGTTAGGGAAATTCTCATCTCTTAGGAAAAACCTCTTACCAAGGGGCC
CGGAACTTAAATAAACCAGAAACTTGTGGCCCCCCCTTAACAATTTGAAA
ACCCCCTGTACTATTTCCCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_j17.g1 MSMg01no383_j17.g1 CHROMAT_FILE:
MSMg01no383_j17.g1 PHD_FILE: MSMg01no383_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:41 2005
         (460 letters)



>mm_chr13_57163423_57164282
          Length = 860

 Score =  866 bits (448), Expect = 0.0
 Identities = 457/460 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgttatttaccttggtcacatgtttgattacagcaacagaaaagtagtaaatatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgttatttaccttggtcacatgtttgattacagcaacagaaaagtagtaaatatact 260

                                                                       
Query: 61  ccattattacaaaatgtgtcggttatattaagcttaactaatatatgtattcatctaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccattattacaaaatgtgtcggttatattaagcttaactaatatatgtattcatctaata 320

                                                                       
Query: 121 aggtgatggatttcatgactttttaactcaaatatattatatactttgaccatatttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgatggatttcatgactttttaactcaaatatattatatactttgaccatatttacc 380

                                                                       
Query: 181 tcacattactctcctgtctcacaatcagtcaccttcacctgtcaggactattctttttct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tcacattactctcctgtctcacaatcagtcaccttcacctgtcaggactattatttttct 440

                                                                       
Query: 241 atatttatatatattttttccttacatgtgtgcatgtgcatgcacgtgtatgtatacatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 441 atatttatatatattttttccttacatgtgtgcatgtgcatgcacgtgtgtgtacacatt 500

                                                                       
Query: 301 ctctaagttccatgtatgagagaaaaatatgcatttgtgttcttgcttctgtctcatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctaagttccatgtatgagagaaaaatatgcatttgtgttcttgcttctgtctcatttt 560

                                                                       
Query: 361 gcttaataatattctctgcttccatgtctttcccacaaatggtttaattttattcattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttaataatattctctgcttccatgtctttcccacaaatggtttaattttattcattat 620

                                                   
Query: 421 cattatcaaaataactgttacttcacaccattctgtactc 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattatcaaaataactgttacttcacaccattctgtactc 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)