Query= MSMg01no384_d06.b1 MSMg01no384_d06.b1 CHROMAT_FILE:
MSMg01no384_d06.b1 PHD_FILE: MSMg01no384_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:27 2005
(474 letters)
>mm_chr13_56937967_56938838
Length = 872
Score = 861 bits (445), Expect = 0.0
Identities = 461/467 (98%), Gaps = 2/467 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaagtgtgcggtagaatggaaatagctcaagcttggagtcagatggtggctgga 64
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gaattcaaagtgtgcggt--aatggaaatagctcaagcttggagtcagatggtggctgga 612
Query: 65 acctgaacgctctccccagccagggagccacttgggatggcccagccttagttttcccaa 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 acctgaacgctctccccggccagggagccacttgggatggcccagccttagttttcccaa 552
Query: 125 gtgaaacatggtcaggaaacaggaacactagagcatgagttcataaatgatgtctccagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtgaaacatggtcaggaaacaggaacactagagcatgagttcataaatgatgtctccagt 492
Query: 185 ttggggggagggggtgttactgtgaagactttgtgtaacagtgtaactatgcccccagtt 244
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 491 ttggggggagggggtgttactgtgaagactctatgtaacagtgtaactatgcccccagtt 432
Query: 245 tggagggttacagtgaagactctgtgcaacaatgtaactagcatgctgtctacagtggaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tggagggttacagtgaagactctgtgcaacaatgtaactagcatgctgtctacagtggaa 372
Query: 305 cctcaagaaacagcagtaggtaacgtctggtgctgttgagatttcatgttgcctgatgcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cctcaagaaacagcagtaggtaacgtctggtgctgttgagatttcatgttgcctgatgcc 312
Query: 365 tgtgcttacaggctccgtgcaagaactcacttctgggctctccatgccaaactcactcag 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtgcttacaggctacgtgcaagaactcacttctgggctctccatgccaaactcactcag 252
Query: 425 taagcatcctccatggaataaactgaaaatgaagggtaaaagaatga 471
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taagcatcctccatggaataaactgaaaatgaagggtaaaagaatga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 872
Length adjustment: 10
Effective length of query: 464
Effective length of database: 862
Effective search space: 399968
Effective search space used: 399968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_d06.g1 MSMg01no384_d06.g1 CHROMAT_FILE:
MSMg01no384_d06.g1 PHD_FILE: MSMg01no384_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:27 2005
(521 letters)
>mm_chr13_56810338_56811253
Length = 916
Score = 980 bits (507), Expect = 0.0
Identities = 516/521 (99%), Gaps = 5/521 (0%)
Strand = Plus / Plus
Query: 1 atacgtgtgcaaaatgactctgtgttttaggattatagaaaagctttgttaattaaactc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 atacgtgtgcaaaatgactctgtgttttaggattatagaaaagctttgttaa----actc 256
Query: 61 cctttgacatctggatgtacatgctggtgagtaactctgaatgtgaagaatccagaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cctttgacatctggatgtacatgctggtgagtaactctgaatgtgaagaatccagaaaag 316
Query: 121 ctgtgttccacagtgaaccatcacttcacagttgtaaactcattctcttgaagggatgta 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctgtgt-ccacagtgaaccatcacttcacagttgtaaactcattctcttgaagggatgta 375
Query: 181 ggaagggaagtgcatagaaacccttgaaatagaagtcaggcctccctctgcattgggaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggaagggaagtgcatagaaacccttgaaatagaagtcaggcctccctctgcattgggaac 435
Query: 241 atagactatatacagggacattgtgtgtaaggaaagttagccaggtacagtaacgcatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atagactatatacagggacattgtgtgtaaggaaagttagccaggtacagtaacgcatgc 495
Query: 301 tttcattctgagcccatgtgtgccctgatgatatacgttcttggagacaggggttggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tttcattctgagcccatgtgtgccctgatgatatacgttcttggagacaggggttggagg 555
Query: 361 ccagcctgacagcacagtaacctgtcaagaaaacccagagcagttcaactgtgtgatgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ccagcctgacagcacagtaacctgtcaagaaaacccagagcagttcaactgtgtgatgtg 615
Query: 421 tgatgtatgtaacatctgagctcaagtctatgtgaagctgaacttgaaattcaaatgtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgatgtatgtaacatctgagctcaagtctatgtgaagctgaacttgaaattcaaatgtca 675
Query: 481 tcagaaacccaagagagatgatcaagcaggagaatactgag 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tcagaaacccaagagagatgatcaagcaggagaatactgag 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 916
Length adjustment: 10
Effective length of query: 511
Effective length of database: 906
Effective search space: 462966
Effective search space used: 462966
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
