BAC Information

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BAC

Clone NameMSMg01-384L14
Chromosome13 (Build37)
Map Location 67,199,324 - 67,356,806
singlet/doubletdoublet
Overlap geneZfp759, Rsl1, LOC674699, Zfp455, Zfp458
Upstream geneLOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708
Downstream geneZfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384L14.T7 (MSMg01no384_l14.b1)MSMg01-384L14.TJ (MSMg01no384_l14.g1)
ACCAG488093AG488094
length729706
length of high quality
(start - end)		497 (59 - 555)517 (69 - 585)
definitionCHROMAT_FILE: MSMg01no384_l14.b1 PHD_FILE: MSMg01no384_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:05 2005CHROMAT_FILE: MSMg01no384_l14.g1 PHD_FILE: MSMg01no384_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,356,310 - 67,356,806)(67,199,324 - 67,199,840)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATACTATAGAGAAACTCTACAAGTATGAAGCATGTAGCCTGGCCTTCTA
TTGGCCATAATTACCTTCTCAACACAAGAGAACCCATTTCAGATGTGAGC
CCCTACAATTGTAAAGTACAAGTCCTGTCCTTTAGAACTTCCCAGATTCT
TTCTACTCATTTCATAGCCCATTCTGGGGAGAAACATTACACATGTGAGT
AATGGGGAAAAGCTTGCTCTACAAAGTCATACTTATGTCTTGCCAAATTA
ACTCACAATGTGGAGAACATATACAAATGCAAAGAATATGGGGAAATGCT
CAACAAAAACTTTAGGGATCGTCAAAGTATTTGTTCTGGAGGAAAAAAAA
AACCCATATGAATGTAAAGAATCTGTCAATTAATTTAGAAGTCCCATTGT
ATGACCAAACATGGGATGATTCTTACTGGAGACACACATTACAAATGTGA
ATAATATTGAAAAACCTATTACCAGTCTTATGATCTTAACCAACACTAAA
GAATTCATCTGTCAAAGAAACCATTCAAATGTGAAGAATGTGCCAAGGTC
TTCTGGACTTACTAAGTACTTTTTGATCACCTCCCAATTCTTACTAAACT
GAAAAGCCCCTTGTGAAAAAAGTTGCAAACCCTTTATTAAGGTTCTTATA
TTTCTCTACATAAAGAAAGTCAACCCGGG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGGTGTCTTTTAAGGTCTGAAGAATAGTAA
AACATTTTGCCACATTCTTTGCACTTGTAGGATTTCTGTCCACTATGAGC
TTTCTTGTGTCGACTGAGGTGATAACTCCTGCTGTAGGCTTTGCCACATT
TCTCACAGGTGTAGCGTTTCTCTCCAGTGTGAACTACTTTGTGTCTACTA
AGGGCTGAAAGATTGCTGAAGGGTTTTTTACACTCTTCGCACTTGTATGG
TTTCTCTCCGGTATGAACTCTTTGGTGTTTTGTAAAGTCTGCAGGACTGG
AAAACTTTTTGCCACATACTTCACACTCATAGGGCTTCTCCCCAGTGTGA
ATTTTCTGGTGGTTAGTAAGTGTGGAGGGCATAAGAAAGGCCTTGCCACA
TACTTCACATTTGTAAGGCTTCTCTCCAGTGTGAATTTTCTGGTGGTTAG
TAAGTGTGGAGGGCATAAGAAAGGCCTTGCCACATACTTCACATTTGTAA
GGCTTTTCTCCAGTGTGAATTTTCTGGTGGTTATGAAGTATGGAGGGCAG
AGAAAAGGCCTTGCCGCATATGTCACACGTGTATGGTTTTTTCTCCCGCG
TGAATTCTCCGGTGTTGATCTATGCACTACCCCTCTACAACTGTTTTTTC
CCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_l14.b1 MSMg01no384_l14.b1 CHROMAT_FILE:
MSMg01no384_l14.b1 PHD_FILE: MSMg01no384_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:05 2005
         (497 letters)



>mm_chr13_67356110_67357006
          Length = 897

 Score =  961 bits (497), Expect = 0.0
 Identities = 497/497 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagaaactctacaagtatgaagcatgtagcctggccttctattggccataattaccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 agagaaactctacaagtatgaagcatgtagcctggccttctattggccataattaccttc 638

                                                                       
Query: 61  tcaacacaagagaacccatttcagatgtgagcccctacaattgtaaagtacaagtcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tcaacacaagagaacccatttcagatgtgagcccctacaattgtaaagtacaagtcctgt 578

                                                                       
Query: 121 cctttagaacttcccagattctttctactcatttcatagcccattctggggagaaacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cctttagaacttcccagattctttctactcatttcatagcccattctggggagaaacatt 518

                                                                       
Query: 181 acacatgtgagtaatggggaaaagcttgctctacaaagtcatacttatgtcttgccaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 acacatgtgagtaatggggaaaagcttgctctacaaagtcatacttatgtcttgccaaat 458

                                                                       
Query: 241 taactcacaatgtggagaacatatacaaatgcaaagaatatggggaaatgctcaacaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taactcacaatgtggagaacatatacaaatgcaaagaatatggggaaatgctcaacaaaa 398

                                                                       
Query: 301 actttagggatcgtcaaagtatttgttctggaggaaaaaaaaaacccatatgaatgtaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 actttagggatcgtcaaagtatttgttctggaggaaaaaaaaaacccatatgaatgtaaa 338

                                                                       
Query: 361 gaatctgtcaattaatttagaagtcccattgtatgaccaaacatgggatgattcttactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaatctgtcaattaatttagaagtcccattgtatgaccaaacatgggatgattcttactg 278

                                                                       
Query: 421 gagacacacattacaaatgtgaataatattgaaaaacctattaccagtcttatgatctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gagacacacattacaaatgtgaataatattgaaaaacctattaccagtcttatgatctta 218

                            
Query: 481 accaacactaaagaatt 497
           |||||||||||||||||
Sbjct: 217 accaacactaaagaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_l14.g1 MSMg01no384_l14.g1 CHROMAT_FILE:
MSMg01no384_l14.g1 PHD_FILE: MSMg01no384_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:05 2005
         (517 letters)



>mm_chr13_67199124_67200040
          Length = 917

 Score =  977 bits (505), Expect = 0.0
 Identities = 514/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggtgtcttttaaggtctgaagaatagtaaaacattttgccacattctttgcacttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggtgtcttttaaggtctgaagaatagtaaaacattttgccacattctttgcacttgt 260

                                                                       
Query: 61  aggatttctgtccactatgagctttcttgtgtcgactgaggtgataactcctgctgtagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggatttctgtccactatgagctttcttgtgtcgactgaggtgataactcctgctgtagg 320

                                                                       
Query: 121 ctttgccacatttctcacaggtgtagcgtttctctccagtgtgaactactttgtgtctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgccacatttctcacaggtgtagcgtttctctccagtgtgaactactttgtgtctac 380

                                                                       
Query: 181 taagggctgaaagattgctgaagggttttttacactcttcgcacttgtatggtttctctc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagggctgaaagattgctgaagggttttttacactcttcgcacttgtatggtttctctc 440

                                                                       
Query: 241 cggtatgaactctttggtgttttgtaaagtctgcaggactggaaaactttttgccacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cggtatgaactctttggtgttttgtaaagtctgcaggactggaaaactttttgccacata 500

                                                                       
Query: 301 cttcacactcatagggcttctccccagtgtgaattttctggtggttagtaagtgtggagg 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcacactcgtagggcttctccccagtgtgaattttctggtggttagtaagtgtggagg 560

                                                                       
Query: 361 gcataagaaaggccttgccacatacttcacatttgtaaggcttctctccagtgtgaattt 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 gcataagaaaggccttgccacatacttcacatttgtaaggcttctccccagtgtgaattt 620

                                                                       
Query: 421 tctggtggttagtaagtgtggagggcataagaaaggccttgccacatacttcacatttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctggtggttagtaagtgtggagggcataagaaaggccttgccacatacttcacatttgt 680

                                                
Query: 481 aaggcttttctccagtgtgaattttctggtggttatg 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggcttttctccagtgtgaattttctggtggttatg 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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