BAC Information

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BAC

Clone NameMSMg01-385K07
Chromosome13 (Build37)
Map Location 3,646,118 - 3,646,514
singlet/doubletsinglet
Overlap geneAsb13
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2
Downstream geneCalml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385K07.T7 (MSMg01no385_k07.b1)MSMg01-385K07.TJ (MSMg01no385_k07.g1)
ACCAG488796AG488797
length774754
length of high quality
(start - end)		560 (26 - 585)546 (55 - 600)
definitionCHROMAT_FILE: MSMg01no385_k07.b1 PHD_FILE: MSMg01no385_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:16 2005CHROMAT_FILE: MSMg01no385_k07.g1 PHD_FILE: MSMg01no385_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATACGACTCACTATATCCAGAGGATCCGCGGAATTCTTTATATATACTG
GATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATC
TGTTGGTGGCCTTTTTGTCTTATTGACAATGTCTTTTGCCTTACAGAAAC
TTTGCAATTTTATGAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAA
GCCATTGCTGTTCTATTTAGGAATTGTTTTCCCTGTGCCCATATCTTTGA
GGCTTTCCCCCACTTTCTCCTCTGTAAGTTTCACTGTCTCTGGTTTTATA
TGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGCA
TGGATCAATTCGCATTCTTCTACATGACAACTGCCAGTTGTGCCAGCACC
ATTGGTTGAAAATGCTGTCTTTTTTCCACAGGATGGTTTTAGCTCTCTTG
TCAAAGATTAAGTGACCATAGGTGTGTGGGTTCATTTATGGACCCTCAAT
TCTATTCCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTT
TTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAGTCATGGTGATTCCA
CCAGAGGTTCTTTTATCATTGAGAAGAGATTTTGCCATTTTAGGTTTTTT
GTTAATCCACAAGAATTTGCCAATTGGCCTTTCTAAATTCTTTGAAAAAA
TTATTTTGCAACTTTTAGGCGGAATGTCTCGGATTCTTGCTAATTGCTTC
TTTTCAAAAAATTCCTTTTTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAAGCTCAGGGTTGGCTTCAAGGACTGCCTAGGATATTGGAACACT
GGTGGAGGCTTAGCTATATGTCAAAATCAATCCTTAAAGGCACTTATAAT
AAAACAATACTGAAAGAGAGCACATGGATCCATACATCAGACTAACAAGG
GGACAGGGTTTGAGTATATGGGCTATTGGAATGCCAAGATTCCAGGAGAC
TGTTTCCTTGAAACTCTTTGCTTGTGACTGCTTCCAAGCTTTTAGGCCTG
TAATGCGTGTCACTACTGGTGTGGATGTAGCAGTCTCTCACTATTCCCAT
TTTCATTCAGCACTAGTTGGGCCTAGACGCATTGCTGTGTGCACACTGGA
ACTGATGTTTTCAGTCAGTTTCCCTCCTCATTGACCCTCCTTTCTATCCA
GCCAAAGAGTGCCAAGAGTGGTGCTGGGGCTGGAGAGATGGCTTAGTGGT
TAAAAGTATACTGGCTGTTCTTCTAGAGGTCCTGAGTTCAATTCCCAGCA
ACCACATGATGGCTCACAACCATCTATACTGGGATCTGATGCCCTCTTCT
GGCATGTAGGTGTACATGCAGATAGAGCACTCAGATACCTAAAGTAAATA
AATCTTTCCTTTTTTAAGAATTACTTACTTTGGGAAGGTCACTTTTGGAG
AGCTCAAAAACTTAACACAGAACCTTATTAGCCAACAGCAACGATAGGAA
AGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_k07.g1 MSMg01no385_k07.g1 CHROMAT_FILE:
MSMg01no385_k07.g1 PHD_FILE: MSMg01no385_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:16 2005
         (546 letters)



>mm_chr13_3645769_3646714
          Length = 946

 Score =  768 bits (397), Expect = 0.0
 Identities = 397/397 (100%)
 Strand = Plus / Plus

                                                                       
Query: 150 cagggtttgagtatatgggctattggaatgccaagattccaggagactgtttccttgaaa 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cagggtttgagtatatgggctattggaatgccaagattccaggagactgtttccttgaaa 409

                                                                       
Query: 210 ctctttgcttgtgactgcttccaagcttttaggcctgtaatgcgtgtcactactggtgtg 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctctttgcttgtgactgcttccaagcttttaggcctgtaatgcgtgtcactactggtgtg 469

                                                                       
Query: 270 gatgtagcagtctctcactattcccattttcattcagcactagttgggcctagacgcatt 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gatgtagcagtctctcactattcccattttcattcagcactagttgggcctagacgcatt 529

                                                                       
Query: 330 gctgtgtgcacactggaactgatgttttcagtcagtttccctcctcattgaccctccttt 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gctgtgtgcacactggaactgatgttttcagtcagtttccctcctcattgaccctccttt 589

                                                                       
Query: 390 ctatccagccaaagagtgccaagagtggtgctggggctggagagatggcttagtggttaa 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctatccagccaaagagtgccaagagtggtgctggggctggagagatggcttagtggttaa 649

                                                                       
Query: 450 aagtatactggctgttcttctagaggtcctgagttcaattcccagcaaccacatgatggc 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aagtatactggctgttcttctagaggtcctgagttcaattcccagcaaccacatgatggc 709

                                                
Query: 510 tcacaaccatctatactgggatctgatgccctcttct 546
           |||||||||||||||||||||||||||||||||||||
Sbjct: 710 tcacaaccatctatactgggatctgatgccctcttct 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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