Query= MSMg01no385_n03.b1 MSMg01no385_n03.b1 CHROMAT_FILE:
MSMg01no385_n03.b1 PHD_FILE: MSMg01no385_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:30 2005
(590 letters)
>mm_chr13_9233499_9234489
Length = 991
Score = 1048 bits (542), Expect = 0.0
Identities = 570/588 (96%), Gaps = 16/588 (2%)
Strand = Plus / Minus
Query: 5 gaattcccagtccacctccccacacctcctaagtgctgggattactggcctgtgcatcac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gaattcccagtccacctccccacacctcctaagtgctgggattactggcctgtgcatcac 727
Query: 65 tgctatgccaaaacaaaactccaaaccaagcaaacaaataatcttgatttaaaaaaagaa 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 726 tgctatgccaaaacaaaactccaaaccaagcaaacaaataatcttgattttaaaaaagaa 667
Query: 125 tctttctattgggtctggggagatagcaccgttgataagtgcttgctgtttgctatgagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tctttctattgggtctggggagatagcaccgttgataagtgcttgctgtttgctatgagc 607
Query: 185 acaaggccataacatcccctctgtaaaagccaggtaaagagagccaggtgttgttcacag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acaaggccataacatcccctctgtaaaagccaggtaaagagagccaggtgttgttcacag 547
Query: 245 gaagcttcc-ctacagaggcagagagaggagaaaaaacttgtcttggaaaccaaagtgga 303
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaagcttccactacagaggcagagagaggagaaaaaacttgtcttggaaaccaaagtgga 487
Query: 304 tggcattctgggcctctctgtgcgtgtggatttgcatatataggtacacaaacaccctct 363
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tggcattctgggcctctctgtgcgtgtggatttgcatatataggta-------------- 441
Query: 364 catcaattctttggttgacaattttcttttatctttttgttcacaactttctttattccc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catcaattctttggttgacaattttcttttatctttttgttcacaactttctttattccc 381
Query: 424 ccactc-tttttttttaagtctctagcagccttctgcttccagcggatgtaataaacaga 482
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccactcttttttttttaagtctctagcagccttctgcttccagcggatgtaataaacaga 321
Query: 483 cctgtctcctcctccctagggctgggattacaggcatgcactaccacgccctactcttgt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cctgtctcctcctccctagggctgggattacaggcatgcactaccacgccctactcttgt 261
Query: 543 ggcaattctgaactcaggttctcacacttgaaggcacgctctttttca 590
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcaattctgaactcaggttctcacacttgaaggcacgctctttttca 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space: 568980
Effective search space used: 568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_n03.g1 MSMg01no385_n03.g1 CHROMAT_FILE:
MSMg01no385_n03.g1 PHD_FILE: MSMg01no385_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:30 2005
(480 letters)
>mm_chr13_9066089_9066968
Length = 880
Score = 862 bits (446), Expect = 0.0
Identities = 476/496 (95%), Gaps = 16/496 (3%)
Strand = Plus / Plus
Query: 1 agtgataatggttttgtttgggatgaataaacaaacctgcttattctattttgtgggtga 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgataagggttttgtttgggatgaataaacaaacctgcttattctattttgtgggtga 260
Query: 61 catgagtcagttccttaatgctaaaaaaacctagcagttcagaatagtgactcccagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgagtcagttccttaatgctaaaaaaacctagcagttcagaatagtgactcccagttt 320
Query: 121 acaggtgagtaaatcaaggttcagaaagagtacgcaacttaaagttcatgatcaaggcaa 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 acaggtgagtaaatcaaggttcagaaagaatacgcaacttaaagttcatgatcaaggcaa 380
Query: 181 gaaccagaacagggctccctctttcccactgtaggctttcttgcagaatcatctgcagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaccagaacagggctccctctttcccactgtaggctttcttgcagaatcatctgcagat 440
Query: 241 atcactagcattatctggaacctaaagacaaaagtaactgtgactcaaagaaggataaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcactagcattatctggaacctaaagacaaaagtaactgtgactcaaagaaggataaga 500
Query: 301 aggaccttgagaaagaacttcctcccccaccccaacactctcagtatgtgcagtgtgtgt 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 aggaccttgagaaagaacttcctcccccaccccaacactctcagtatgtgtagtgtgtgt 560
Query: 361 atgtgtgccagagaacagctctaagttgtatacacacacacacacacacacacacac--- 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtgtgccagagaacagctctaagttgtatacacacacacacacacacacacacacaca 620
Query: 418 -------------tgttatgtctcaagagctgtcaatcttgtctctttgagacagggtct 464
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacacacacacactgttatgtctcaagagctgtcaatcttgtctctttgagacagggtct 680
Query: 465 ttcacttgcctggagc 480
|||||||||||||||
Sbjct: 681 ctcacttgcctggagc 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
