BAC Information

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BAC

Clone NameMSMg01-386C06
Chromosome13 (Build37)
Map Location 113,847,557 - 113,848,107
singlet/doubletsinglet
Overlap geneCdc20b
Upstream geneLOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik
Downstream geneGzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386C06.T7 (MSMg01no386_c06.b1)MSMg01-386C06.TJ (MSMg01no386_c06.g1)
ACCAG489177AG489178
length728730
length of high quality
(start - end)
554 (46 - 599)532 (76 - 607)
definitionCHROMAT_FILE: MSMg01no386_c06.b1 PHD_FILE: MSMg01no386_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:53 2005CHROMAT_FILE: MSMg01no386_c06.g1 PHD_FILE: MSMg01no386_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATGTTTTCCAGGCCTCAAACTTGCCACAATCCTTCCACCTCA
GCCTTCCAAGATGACAGGTGTGAGCCAGTGTGCCAAGCTCAGCGAGCTTC
CTAAGACACATGCTCAGTAGTGCCAGCCTCTTCCTGAGGTACTATGGTTC
TGAGGACTGAAAAGGGACCCAAATCTTTATAAAACTGAGGAATTTCCCAC
ACAATGACAAGTGTCAACCCCAGAATTACCTGACTGTGGAACGGGGAGAC
TCAGGAGTGTAGGAAGTCTTTTGTATTCAGTATAATTGAGGAAATTTGGA
TATTCATTGTTTTAGAGGAATTTCTTGCTGCAATTAGGAATTCCTGGCTC
TTTCTGAGCTCGAAATTGACTTGCCAGTTGTTCCTTAATAAAACAGTGTG
TGAAAAATTGAAAATCTCAAGCAACAGATTATTAATCAAATGGAGTTTAC
AGGAAAAACCCATTCTACTTTCTCCTTTAGCTAATCCTGAGACACAATGA
CTCACGTGGATCCTACCCGCTTGTCTGGACATGGTCCATTTTGTTTCAGA
AGAGCAAATCCAGAATATCCTTCTGTCCGTGTCTGCAGAGACATCTCTTT
GCTTCCGTCCCTGTCTGCTTAGACATCTCTTTGCTAAGAGGCTCATTTGC
ACGCTGCTGTGCTCTGCGCATGAAGCTG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATTTAATTTCTAGTATGTGTAGC
ACCTACACATAGTCCCGTCAGTTTGTACTACTTACTTGTGTGAAGTGGCC
TTCTCAGTACAGAAGATTATAAAACCAAACCATCTACAACTCTGAAAAAT
ATGAAAGATGCTCATATTAAATATTTAGCTAATGTTAAAATCTTTATGTG
GGAATAAACAATTGCATCAATCTCCTTGATATGATAATTTTCTTTAGTCT
TCAATGATCAAATCATAAGTATGCTAAATAGTTGTTCTAAAATCACTTTT
TGAAGGTTAATCGTCAGGGCTGGCGAGATGGCTCAGTGGTTAGGATCACT
GGCTGCTCTTCCAGAGGTCCTGAGTTTAATCCCAGCAACCACATGGTGGC
TCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAG
ACAGCTACAGTGTACTCACAAACATAAAATACAATTTAAAAATGTATCAT
CAGAAAGCATTTGGTTTTATATTCTTACTTTAAAACCTAGTGTTAAATTT
TCTCCAACAAAAAAGGTGTTCCATCTTTACTTTAAAAATGTTTTTATTTG
GTGGGGCGCATGTATATGTGCACGTGTTACATGTAAATCTTCCCACCAAG
GCCAGCATATGACCAGGTATGCCCTGTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_c06.b1 MSMg01no386_c06.b1 CHROMAT_FILE:
MSMg01no386_c06.b1 PHD_FILE: MSMg01no386_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:53 2005
         (554 letters)



>mm_chr13_113847354_113848307
          Length = 954

 Score = 1007 bits (521), Expect = 0.0
 Identities = 544/553 (98%), Gaps = 4/553 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactatgt--tttccaggcctcaaacttgccacaatccttccacctcagccttc 61
           ||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactatgtagtt--caggcctcaaacttgccacaatccttccacctcagccttc 261

                                                                       
Query: 62  caagatgacaggtgtgagccagtgtgccaagctcagcgagcttcctaagacacatgctca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caagatgacaggtgtgagccagtgtgccaagctcagcgagcttcctaagacacatgctca 321

                                                                       
Query: 122 gtagtgccagcctcttcctgaggtactatggttctgaggactgaaaagggacccaaatct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtagtgccagcctcttcctgaggtactatggttctgaggactgaaaagggacccaaatct 381

                                                                       
Query: 182 ttataaaactgaggaatttcccacacaatgacaagtgtcaaccccagaattacctgactg 241
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 382 ttataaaactgaggaatttcccacacaataacaagtgtcaaccccagaattacctgactg 441

                                                                       
Query: 242 tggaacggggagactcaggagtgtaggaagtcttttgtattcagtataattgaggaaatt 301
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 442 tggaacggggagactcaggagtgtaggaagtcttttgtattcagtgtaattgaggaaatt 501

                                                                       
Query: 302 tggatattcattgttttagaggaatttcttgctgcaattaggaattcctggctctttctg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tggatattcattgttttagaggaatttcttgctgcaattaggaattcctggctctttctg 561

                                                                       
Query: 362 agctcgaaattgacttgccagttgttccttaataaaacagtgtgtgaaaaattgaaaatc 421
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 562 agctcgaaattgacttgccagttgtttcttaataaaacagtgtgtgaaaaattgaaaatc 621

                                                                       
Query: 422 tcaagcaacagattattaatcaaatggagtttacaggaaaaacccattctactttctcct 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcaagcaacagattattaatcaaatggagtttacaggaaaaacccattctactttctcct 681

                                                                       
Query: 482 ttagctaatcctgagacacaatgactcacgtggatcctacccgcttgtctggacatggtc 541
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 682 ttagctaatcctgagacacaatgacacacgtggattctacccgcttgtctggacatggtc 741

                        
Query: 542 cattttgtttcag 554
           |||||||||||||
Sbjct: 742 cattttgtttcag 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)