Query= MSMg01no386_d08.b1 MSMg01no386_d08.b1 CHROMAT_FILE:
MSMg01no386_d08.b1 PHD_FILE: MSMg01no386_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:58 2005
(373 letters)
>mm_chr13_52769696_52770468
Length = 773
Score = 551 bits (285), Expect = e-161
Identities = 347/379 (91%), Gaps = 22/379 (5%)
Strand = Plus / Plus
Query: 5 gaattccataattattaccggatctgccaagtgggtgagggattaggtggctcagcaggt 64
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 207 gaattccataattaataaaggatctgccaagtgggtgagggattaggtggcgcagcaggt 266
Query: 65 aagggccactttccatcaagttttagaaactgaattctacccctaggactcacacggtag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aagggccactttccatcaagttttagaaactgaattctacccctaggactcacacggtag 326
Query: 125 aaagaaagaactgatttcctaaaattgtcctgggatctccacacatgcgccttggcatat 184
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 327 aaagaaagaactgatttccgaaaattgccctgggatctccacacatgcgccttggcatat 386
Query: 185 gtgtgtgtgtgtgtgtatacgt--------atacatatacatatacatatatatgtata- 235
|||||||||||||||| | || |||||||||||||||| ||||| |||||
Sbjct: 387 gtgtgtgtgtgtgtgtgt--gtgtgtgtgtatacatatacatatacgtatat--gtatac 442
Query: 236 -tatatatatgaatatatatatatatatattcccacaataaataaatgttttaaaaaata 294
|||| |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 gtatacatat--------atatatatgtattcccacaataaataaatgttttaaaaaata 494
Query: 295 gaaagaagagaaaagaaagtctcttcctgatatgttaagtggacgtgtgtgtaactatca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaaagaagagaaaagaaagtctcttcctgatatgttaagtggacgtgtgtgtaactatca 554
Query: 355 ctgaaagagctgttcagaa 373
|||||||||||||||||||
Sbjct: 555 ctgaaagagctgttcagaa 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_d08.g1 MSMg01no386_d08.g1 CHROMAT_FILE:
MSMg01no386_d08.g1 PHD_FILE: MSMg01no386_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:58 2005
(504 letters)
>mm_chr13_52984616_52985516
Length = 901
Score = 692 bits (358), Expect = 0.0
Identities = 375/382 (98%), Gaps = 3/382 (0%)
Strand = Plus / Minus
Query: 1 aataaaataatcctgaaagtagttcaggaatatgagaggttcagaggtgttccccagtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aataaaataatcctgaaagtagttcaggaatatgagaggttcagaggtgttccccagtca 320
Query: 61 aagactgtctacaattcacacagaaagcttttgagggatgctgggaaggcttgtgtctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagactgtctacaattcacacagaaagcttttgagggatgctgggaaggcttgtgtctta 260
Query: 121 tggaagatgaaagaggcagaaagtcttcatgggacacccaatttaaaaatgtgtgccgaa 180
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 259 tggaagatgaaagaggcagaaagtcttcatggga---ccaatttaaaaatgtgtgctgaa 203
Query: 181 taagctgggtgtggtggcacactcctttaatcccagcattcgggaggcagaggcaggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 taagctgggtgtggtggcacactcctttaatcccagcattcgggaggcagaggcaggtgg 143
Query: 241 atttctgagttctaggccagcctggtctacagagtgagttccaggacagccagggctgca 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 atttctgagttggaggccagcctggtctacagagtgagttccaggacagccagggctgca 83
Query: 301 cagagaaaccctgtcttgaaaaacaagtaagcaaataaacaaacaaacaaaaaacaaata 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 82 cagagaaaccctgtcttgaaaaacaagtaagcaaacaaacaaacaaacaaaaaacaaata 23
Query: 361 aaaatgcatgccgaaatgaact 382
||||||||||||||||||||||
Sbjct: 22 aaaatgcatgccgaaatgaact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 901
Length adjustment: 10
Effective length of query: 494
Effective length of database: 891
Effective search space: 440154
Effective search space used: 440154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
