BAC Information

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BAC

Clone NameMSMg01-387G23
Chromosome13 (Build37)
Map Location 69,597,332 - 69,597,619
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205, LOC218332
Downstream genePols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387G23.T7 (MSMg01no387_g23.b1)MSMg01-387G23.TJ (MSMg01no387_g23.g1)
ACCAG490168AG490169
length7601,517
length of high quality
(start - end)
288 (115 - 402)---
definitionCHROMAT_FILE: MSMg01no387_g23.b1 PHD_FILE: MSMg01no387_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:29 2005CHROMAT_FILE: MSMg01no387_g23.g1 PHD_FILE: MSMg01no387_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGCTGTGAAATGCAGTCTGAACCAATATGAGATGGCTATG
CGGCAGAAAGTGATCACACAGTGTGTGTAGGTGGGTGTGTTTCTGTGTCT
CTCTGTCTGTCTGGGTCTGTCGGGGTCTATACATCTGTGTTGTGTCTTAA
CCCCAAACTTTTGAAAGAAAATTTTAAAAATTGAGTCTTTCAGCACATGA
TAATTCAGTCACTAGCCAATCCTGCCTGGGTCCCACTGAGCAAGAAAAAA
TCCCCCAAAGTTCTGTCAACAGAGCGTGCTCTGGAAGTCACCTGATGAAC
AGCACCCTTGTTCATGGCCAGAGACCTCCAACCAGATGTGTCTGTGTCTC
ACTCCCATGAGCTCCATACTGCGTTTACAGCACCGGCATTCACAATCGAA
ATCAGCATACATGCTTCTCATAAACCTGAATTACCCCATTACTCACCTCC
GCCTCCGCTGCCACCCTGATCGCTGCCCCACACACCGTCCAACCCTGTTC
ACTTGCCCTCCTTTTTTCCTTATCTAACCCGTCCTCCTTCCCCCCCTTTG
CCCTATTCCCCCTCCCCCCCCTTCCCACATTCCCCCCCTTTTCCCCCCTC
CTTCCCTTTCCCTCCCTTCCCTCCCCCCCCTTTCCCTTTTCTTTTCCCCC
CCCTGTCCCCCCTCCTATTCCCCCCCTCTATTCCCCCCCCCTCTTCCTCC
CCTTCTTTTN
CCACACGCACATACGAACAGATCCGTTTGATCGATCGTCTATGATTCCGC
CCCGATCTTCGAACTCTTCTCGAACTATTGTACGCGTCGTATCCCCAATC
ACTATAGTGATATACGTCCGCTGAAGTATCTTCAGGCGCCGAACTGCGTC
TCATGTTCATACATTAAACGCTTCTAGTATCATAGTTGTTCTACTAGCAC
TTTGCTCCTGTATTCACTATCTACTTACCAAGCCGTATATAGTCCACTAA
ACCGCTTGCCCNCTTAATGTACTGTGCCTCACGAAATTAACATCATTTAC
GCACTATATGTAATTGTGTACTCCACCTCTTCCACATGTCTCCTCGAGTG
TTTACACTATACCACAATATACCTCTCTATACTCACGGCGCATTCTCACA
TACAACCTCTGTCCACGCCGTTGTTTCACCTCGATTACACTATCGTCTCT
CCACTGTCCCGTTTAATTACCACCACTCCGCCCCTATCGCTAATCATATA
TCGCTCACTTATCTCGCTCTCCTACTTATCCCACTGCTACGCTCGCTCTC
ACCACCACCTACCCTCCTCGCTCACGCTTTACTGCCGACGCCTTCGTCTC
CCCTGCTATATCTCTATCTACTCGATCGTAGTACCTCTTCGTATTTACGC
CGATATTATGTCGCTGATGTTCCTCNATCCCGACCGTCTTGTNCTGTCAA
TATACGACCGCGTCTATATCGCGCTCACTCTACATGCGCGCTCCAGATTA
TCACGCACCGCGACCAGTACGAATCCTATTACTTCACACACATATACTAC
CCACAATGCCAGCGCGTCCATCTACTATACACATACACATTTGTGATCAT
CTCGATCGTGCCACCTACTTCATACATACAGTCGATTGATCATATTAGAT
CTACACTTACTCCTATACCGTCCATATACTCTCATCATATATCCGCGCGT
ACGATGCTTATCCCATCCCTCACATCGATTATATTAGCTGCCCGTCTATG
CTCTATACGCCGCGTCTATACTACACACTTATCACTCCACATTCCTTCAT
ATCAACACATGACACCTTGAATGCATATGTTATATGTACCTTAACTCATC
CACTGCCATCGCGCCGCTACTCANCTGATCGCTATGTATCTACCACTCGA
NTTACAGTAATGGCGACCTCTCTCACACCATTTACTTTGATTGTTCTCGA
CTCCGCTNATCTCACACGGACATATATTCGCCATATCTCTGATCTGTCTG
CACTAATGCTCTGCGCCAGCTCTACACATACCCACGTTATTGTTATTANT
CTCCTATCACTATCACGGCTCTTGTGTTCAGAGCTAATATATCTATACCA
TCCACACATACAACACGACTTTCTCTGTACTTCTATCCACTCGCATGTGA
GCATATCTTAGTTGCAGATTCTACACGTCATGACTAGTGCGTATCGTGCG
ANACGAGTGTTGGTAGACTCTCATTCCTGAATCATATATACCTCGAGACC
TCGCTACAGCCTACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_g23.b1 MSMg01no387_g23.b1 CHROMAT_FILE:
MSMg01no387_g23.b1 PHD_FILE: MSMg01no387_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:29 2005
         (288 letters)



>mm_chr13_69597132_69597819
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacagtgtgtgtaggtgggtgtgtttctgtgtctctctgtctgtctgggtctgtcggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacagtgtgtgtaggtgggtgtgtttctgtgtctctctgtctgtctgggtctgtcggg 260

                                                                       
Query: 61  gtctatacatctgtgttgtgtcttaaccccaaacttttgaaagaaaattttaaaaattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctatacatctgtgttgtgtcttaaccccaaacttttgaaagaaaattttaaaaattga 320

                                                                       
Query: 121 gtctttcagcacatgataattcagtcactagccaatcctgcctgggtcccactgagcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctttcagcacatgataattcagtcactagccaatcctgcctgggtcccactgagcaag 380

                                                                       
Query: 181 aaaaaatcccccaaagttctgtcaacagagcgtgctctggaagtcacctgatgaacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaatcccccaaagttctgtcaacagagcgtgctctggaagtcacctgatgaacagca 440

                                                           
Query: 241 cccttgttcatggccagagacctccaaccagatgtgtctgtgtctcac 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccttgttcatggccagagacctccaaccagatgtgtctgtgtctcac 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)