BAC Information

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BAC

Clone NameMSMg01-387N10
Chromosome13 (Build37)
Map Location 73,919,571 - 73,919,819
singlet/doubletsinglet
Overlap geneSlc12a7
Upstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19
Downstream geneNkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, Cast, LOC622204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387N10.T7 (MSMg01no387_n10.b1)MSMg01-387N10.TJ (MSMg01no387_n10.g1)
ACCAG490477AG490478
length751837
length of high quality
(start - end)
249 (74 - 322)120 (83 - 202)
definitionCHROMAT_FILE: MSMg01no387_n10.b1 PHD_FILE: MSMg01no387_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:01 2005CHROMAT_FILE: MSMg01no387_n10.g1 PHD_FILE: MSMg01no387_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCATATCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGACCATCC
GCGGAATTCATGGAGTTTCCAGACTGCTGAAAAACAGCCACACTATACTT
CCCAGCGGTGTGCCTTTGATAAGACAGGAACTCTAAGGACAGTGGAATAT
ACACAGCAAGGCACAATCCCACCCAGAGCTCATACATCAGGACCTTGGAG
CAAGTAGGAGGGGACAAGATTGTATGTCACACCATGGACTGATGCTGAAA
ATATGGCTGGCTGGTCCTTTACTGAATGGTGAGGAAGCTGGAGACAGAGT
AGGTCTGCTGATCTGCCTATGTTTATATGCTCACCCTTGGGAAATCAGGC
AGAGCCTTTCATACAAGTGAAGGCTCACAGGCCAAGGCACAACCTCCCTG
GGTACCCATCAAACCCACACCTGCCCCTACACGGAGACACCATGCCAGCA
TCCTGCAGAACTTCCTTCCATCTGGAGGCCACACCCCTGCACCATCAACT
GCCCCTAATGTGAGATCCCCTCATCTCCCCAACCTCCAAACCCTACCTAC
CCGCGGCCAGACATTACCCCGCCCACCGGCCAATTGCACCTCCCCGTCCA
AGACTCCTGTAATTGCCCCTCCCTTCCCCATCCTTTTTCCCCTCCCCAAC
CTATCCCTCCCTTCATTCCTCCTCCCACACACCTCCCTTTTTCCCTCCCT
TTTTCTATACCCTTTTTTCCCCCTTCCCATTCCTTCCCCTCCCCCCCTCC
T
NNNTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGTTTACAAGCTTTT
GTGGTACAAATGTTGTTCCTTGATTTGAAACTACTGGTTGGTTAAATAAA
ATTGGCTACAGCCAATCACTGGAGGGATTAGAGGTAGGTGGGTTTTGAGC
TACTCTGTTTGTTTTGCTATTTTCCCCTCTTTCCCTTCTCCTCCTTTTCC
CCCTTTCTCCCTTTTTTCCTTCCCCCCCCTCCCTTTTCCCCTCGCCTCTC
TCCTCCTTCTCCCTTTTCCCCTCCTTTTCTCTTTCCTTCCCCCCTTCCCC
TCCCCCTTCTTTCCTTTTTTTCTTCCTTTTCTTCTCTTTTTCTCCCCCCC
TTTTTTTCTTTTTCTCCTTTTTCCCCCCCCCCTCTTCTCCTTCCCCTTTT
TTTTTTTTCTCCCCCTCCTTCCTTCTCTCCTCCTTTTTTTCTTTTCCTCC
TCCTTTCCTTTCCCCTCTCCTTTTCTTTCTGCTCCCTTCTCCCTCCCCCC
TCTTTTTTTTTTCCCTCCCCTCCCTTCTCTATCTTTGTCTTTCCCCTCTC
CTCCTTTCCCCTTTTTTCCCTTCCCCCCCTCTTTTCCCCTCTCTCTCTCT
TCCTTCCTTTCCCCTTTTTCCTTCCCCCCCCCTCTCCTTTTTCCCTCTTC
TTTCCATTTCCTCCCCTATCTCTCCGTTTCTCTTCTTCCACGCCCTCACT
TTCTCCTTCTCTTCTCCTCTCCTCCCATCCCTCCTCACCTTTCTCCTCAT
CTCTTTTCCTTTCTCCCTTTTTCCCTCCTCCTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_n10.b1 MSMg01no387_n10.b1 CHROMAT_FILE:
MSMg01no387_n10.b1 PHD_FILE: MSMg01no387_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:01 2005
         (249 letters)



>mm_chr13_73919371_73920020
          Length = 650

 Score =  412 bits (213), Expect = e-119
 Identities = 240/249 (96%), Gaps = 1/249 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctgaaaa-acagccacactatacttcccagcggtgtgcctttgataagacaggaact 59
           |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 449 ctgctgaaaacatagccacactatgcttcccagcggtgtgcctttgataagacaggaact 390

                                                                       
Query: 60  ctaaggacagtggaatatacacagcaaggcacaatcccacccagagctcatacatcagga 119
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 389 ctaaggacagtggaatatacacagcaaggctcaatcccacccagagctcatacatcagga 330

                                                                       
Query: 120 ccttggagcaagtaggaggggacaagattgtatgtcacaccatggactgatgctgaaaat 179
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 329 ccttggagcaagtaggaggggacaagattgtaagccacaccatggactgatgctgaaaat 270

                                                                       
Query: 180 atggctggctggtcctttactgaatggtgaggaagctggagacagagtaggtctgctgat 239
           |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 269 atggctggctggtcctttactggatggtgaggaagctggaaacagagtatgtctgctgat 210

                    
Query: 240 ctgcctatg 248
           |||||||||
Sbjct: 209 ctgcctatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)