BAC Information

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BAC

Clone NameMSMg01-388K04
Chromosome13 (Build37)
Map Location 50,423,036 - 50,423,605
singlet/doubletsinglet
Overlap genenone
Upstream geneBicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954
Downstream geneLOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388K04.T7 (MSMg01no388_k04.b1)MSMg01-388K04.TJ (MSMg01no388_k04.g1)
ACCAG491083AG491084
length763769
length of high quality
(start - end)
408 (67 - 474)569 (77 - 645)
definitionCHROMAT_FILE: MSMg01no388_k04.b1 PHD_FILE: MSMg01no388_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:00 2005CHROMAT_FILE: MSMg01no388_k04.g1 PHD_FILE: MSMg01no388_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCACTGGTTCTACACCAACTTACCCTAGTCCATAGACTTTTTGCACCTC
CAACAACGCCTCCAAAAGAAGAAATTTATACCTAGTACTAGTATCAATGC
TGTACGTTGTTTACTGTAACTTCTTCCATTTTCTGTGGATTCACCAAAGA
CAGGGTTCCTCAGTTGACCTCCCCACAACCTTGTTCAACCACACATTGGA
CACCAGTTATATCTGTCCAGCAGCCACAGAGAACTGAGTACACCTGAAAG
GGAGGATGGGAATGAAAAAGGACAGGCGGGTGAGAGAAGAATGAAGCCAA
GACAGAGATGTCTGAGGAGGGCTCAAAGTTTAATTTTCAGCTTTGTGTTT
ATATAGGCAAACCCCAAAGACACATCCTTTTGTTTCAGCTGGATTGAGTT
GCAAAGCAAGCTCAGCAGGTAGTCAACTCCTCAAAGCTCAAAGCTCAAAG
TTGGAAGTTGCAAATGCAGCAAGGCCAAGGGCAGCCTCCAGCCAGGTTGT
AAAACCACTGGAGGTTTCTTTAGCCTATTCAAGGCTGGGGAAGGGAACTT
TCCCCCTGGGCCTTTTAATTTTCAGATCCGGATCTAGCCCCCTAAAGCTA
ACTCCTCCCCCTCCCGGGATTTTCTGGCCTAAAAAGGGTGGCCAGCGGAT
TCCAACCCCCGCTTCCAGGCCTGGTCATGGCCCGCCGCTCCCCAAAAAAC
TTCCCTGCCCGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTTTACTTTTCCTACAAGGTA
AGGCCCAGGCCTTGGGGTCACTTTAGAGGTACTGGTAAGCATTATGCAGA
TGTGTGGCAAGTTCCTTGTAGGTTCTGAGTCTGTTCTACTACCAGCTATC
TCTACAGGCTGAACTCAGAGATTAGACAGAGGATGGGACCACTGACTGAC
AAGTGGAGCCCAGGAAAGCAAAACCCCAGCACCGGTGTCCCGGGACTCAG
GATAGTGACAATGACTGCAAAGAAAGTTTCATTTGGCCCTATCATTTATA
GAGTGCTTCTTGTACCAAATTCTGTGTTTCCAAAGCTACTGCATGAGTGA
GAAAGAAGGAGTCCTTTCAAAGAAGACTAGGTCTAAGAGGGTGAAACATA
TTGTCCACAGACGGGCCCGGAGATCCTCCTCCAAATCTGGATAGCACAGT
TCTCCTCCCCATATGCTCCCCTCTATGAGCATTATATGTGGATAGCTTCA
TTGTTCGTGTAGAGCCTACAATGTACCCCCAGTTTTGATTGCTTCACTGT
CAGAGTTCTGCAACTCACATCCTCAGTCACATAGCTCTCCTCACTCAGGA
CCCGGGCCAGCAAAGTCACCTTTGTAGAGGAAGAGCAGAGCCTTACTGTC
ACAGNACATTTTTCTTCCTACTTTTCTCTCTCCCCAANAAACACAAAGGG
GGGGGGCTTCTCTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_k04.g1 MSMg01no388_k04.g1 CHROMAT_FILE:
MSMg01no388_k04.g1 PHD_FILE: MSMg01no388_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:00 2005
         (569 letters)



>mm_chr13_50422836_50423805
          Length = 970

 Score =  978 bits (506), Expect = 0.0
 Identities = 555/572 (97%), Gaps = 5/572 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttttacttttcctacaaggtaaggcccaggccttggggtcactttagaggtactggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcttttacttttcctacaaggtaaggcccaggccttggggtcactttagaggtactggt 260

                                                                       
Query: 61  aagcattatgcagatgtgtggcaagttccttgtaggttctgagtctgttctactaccagc 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aagcattatgcagatgtgtggcaagttccttataggttctgagtctgttctactaccagc 320

                                                                       
Query: 121 tatctctacaggctgaactcagagattagacagaggatgggaccactgactgacaagtgg 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctctacaggctggactcagagattagacagaggatgggaccactgactgacaagtgg 380

                                                                       
Query: 181 agcccaggaaagcaaaaccccagcaccggtgtcccgggactcaggatagtgacaatgact 240
           ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 381 agcccaggaaagcaaaaccccagcaccggtgtccctggactcaggctagtgacaatgact 440

                                                                       
Query: 241 gcaaagaaagtttcatttggccctatcatttatagagtgcttcttgtaccaaattctgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 441 gcaaagaaagtttcatttggccctatcatttatagagtgcttcttctaccaatttctgtg 500

                                                                       
Query: 301 tttccaaagctactgcatgagtgagaaagaaggagtcctttcaaagaagactaggtctaa 360
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 501 tttccaaagctactgcatgagtgagaaagaaggaatcctttcgaagaagactaggtctaa 560

                                                                       
Query: 361 gagg--gtgaaaca-tattgtccacagacgggcccggagatcctcctccaaatctggata 417
           | ||  ||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 g-ggaagtgaagcagt-ttgtccacagacgggcccggagatcctcctccaaatctggata 618

                                                                       
Query: 418 gcacagttctcctccccatatgctcccctctatgagcattatatgtggatagcttcattg 477
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 619 gcacagttcccctccccatatgctcccctctatgagcattatatgtggatagcttcgttg 678

                                                                       
Query: 478 ttcgtgtagagcctacaatgtacccccagttttgattgcttcactgtcagagttctgcaa 537
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 679 ttcgtgtagagcctacaatgtacccccagttttgattgcttcactgtcagggttctgcaa 738

                                           
Query: 538 ctcacatcctcagtcacatagctctcctcact 569
           ||||||||||||||||||||||||||||||||
Sbjct: 739 ctcacatcctcagtcacatagctctcctcact 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space:   536640
Effective search space used:   536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)