BAC Information

Click to search

BAC

Clone NameMSMg01-389J18
Chromosome13 (Build37)
Map Location 100,924,289 - 101,161,366
singlet/doubletdoublet
Overlap geneNaip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838
Upstream geneZfp366, Ptcd2, Mrps27, Mtap1b, Cartpt, Mccc2, Bdp1, Serf1, Smn1
Downstream geneNaip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389J18.T7 (MSMg01no389_j18.b1)MSMg01-389J18.TJ (MSMg01no389_j18.g1)
ACCAG491823AG491824
length755740
length of high quality
(start - end)
265 (81 - 345)425 (85 - 509)
definitionCHROMAT_FILE: MSMg01no389_j18.b1 PHD_FILE: MSMg01no389_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:16 2005CHROMAT_FILE: MSMg01no389_j18.g1 PHD_FILE: MSMg01no389_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:16 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(101,161,103 - 101,161,366)(100,924,289 - 100,924,713)
sequence
TTACTCCTCTATAATTTGCGGNCGCTATACGACTCCTAATCCCAGAGATC
CGCGGAATTCCGAATTTTCCTGTCTCTACGCCTGAGTGATGGGACTAAAT
GTTAGTGCCACCATTCCTGGCTGTACCAGAGGATATTTCAATCCCCTTGC
TTACTGTTACAAACTATTGATGGAAAGTTTCACTTTGGTTCATCTGAGAA
GCACTGCTCTAGAGCCTGAACAAATCTGAGTAAGTGAAAGTTCCAGTGAA
ACAGGTAACCACTGGGAGGCGCTGGTTAGCTGAGGAAAACAAAACTTAGA
AAATGGTAAAAACTTAGGATTTGATTTACTTTTAAAACCTCCAACTTACC
CAGGTGTGGTGGTGCATGCCTTTAATCCCAGCACTCGGGAGGCCCAGGCA
GGCGGATTTCTGACTTCGAGCCCACCCTGCTCTACTGAGTGAGTTCCCGG
ACAGCTCTTACTACTCAGACTAAACCTGCCCTCAAAACAAAAACTCCCCA
CGTATACAACTACCTTACTACACGCTCCACGAACATAACCTGTATCATCA
CCTGCTTCCTCCCCTCCCCTCCCCTTATCATCCCCCCTTCCCTTCTTCGC
ATTCAACCTTTTTCCCCTCCATTTACCTCCCCTCCTCCCACTCCCCTTTT
TTCCCTTTTTTTTTCCCTTTCCCTATTTCCCCCCCCCCTCCTCCTCCCCT
CTTTCCCCCTCTCTTCCCCCTTCCTTCCCTTTCCTTCCCCTCTCCTCCCC
TTCCN
GCCCCCNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGAAAAAAAAAACT
CTCCACTTTGCTGAGTGAGATTAAACTTTCAAGGAAACTACTGGGGCTGT
CAAAGTTTAATGCAGAAAGCGTATCAGGCAGCTCCTCCTTCACCTGCTTG
TGAGGAACAGAATCTTCTTCATTCTCATCCCCTGTGGGCTTCACTTTCTC
TGGCATTGTTCACAAGTAGGGAGGAAATGCTGTTTCATGTTGTCTGAAAG
TTGACTTGGCTACAGCATGGAGGGGTGGGATATTGTTATACCTGGTTTTG
CTTATTTGTAGTTGTTTAAAATGGGAGTAACACTTAATTGTCTGTCACTG
AGTTAGAAAAAGAAAAGAAAAAAAGAAAGAAATCTCTGCCTTTCTGATGA
TTAAGAGCACTGGTCCCACCCTTTCCCATGGACACAGTTCATGCTGTCAG
GCCCAGGGAAGTTTTGATTAATGATGATTTAATGGTTCTAACAATTACTA
GCCAACTAGCTTTTCCAGCTGAGATGTGAATTGGAGATCAAGCACCTTCC
CTTACCTATTTTGTAAAGGGCAGACCTCCCCGGAAGTTCTGATGGATAAC
TTTCCCCTGCGGATGGAGGTCCGTTAATCCCCCCCAAGGATATGAAACAA
CATTCTGCTCTTAACTAAACTTCCCCACTCGGCCTCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_j18.b1 MSMg01no389_j18.b1 CHROMAT_FILE:
MSMg01no389_j18.b1 PHD_FILE: MSMg01no389_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:16 2005
         (265 letters)



>mm_chr13_101160903_101161567
          Length = 665

 Score =  464 bits (240), Expect = e-135
 Identities = 258/264 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgagtgatgggactaaatgttagtgccaccattcctggctgtaccagaggatatttca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 464 cctgagtgatgggactaaatgttagtgccaccattcctggctgtaccagaggatatttaa 405

                                                                       
Query: 61  atccccttgcttactgttacaaactattgatggaaagtttcactttggttcatctgagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 404 atccccttgcttactgttacaaactattgatggaaagtttcactttggttcatctgaaaa 345

                                                                       
Query: 121 gcactgctctagagcctgaacaaatctgagtaagtgaaagttccagtgaaacaggtaacc 180
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 344 gcactgctctagagcctgaacaaatctcagtaagtgaaagttccagtgaatcaggtaacc 285

                                                                       
Query: 181 actgggaggcgctggttagctgaggaaaacaaaacttagaaaatggtaaaaacttaggat 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 284 actgggaggcgctggttagctgaggaaaacaagacttagaaaatggtaaaaacttaggat 225

                                   
Query: 241 ttgatttacttttaaaacctccaa 264
           |||| |||||||||||||||||||
Sbjct: 224 ttgagttacttttaaaacctccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no389_j18.g1 MSMg01no389_j18.g1 CHROMAT_FILE:
MSMg01no389_j18.g1 PHD_FILE: MSMg01no389_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:16 2005
         (425 letters)



>mm_chr13_100924089_100924913
          Length = 825

 Score =  768 bits (397), Expect = 0.0
 Identities = 418/425 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgaaaaaaaaaactctccactttgctgagtgagattaaactttcaaggaaactactgg 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 cttgaaaaaaaaaactctccactttgatgagtgagattaaactttcaaggaaactactgg 260

                                                                       
Query: 61  ggctgtcaaagtttaatgcagaaagcgtatcaggcagctcctccttcacctgcttgtgag 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctgtcaaagtttaatgcagaaatcgtatcaggcagctcctccttcacctgcttgtgag 320

                                                                       
Query: 121 gaacagaatcttcttcattctcatcccctgtgggcttcactttctctggcattgttcaca 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagaatcttcttcgttctcatcccctgtgggcttcactttctctggcattgttcaca 380

                                                                       
Query: 181 agtagggaggaaatgctgtttcatgttgtctgaaagttgacttggctacagcatggaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtagggaggaaatgctgtttcatgttgtctgaaagttgacttggctacagcatggaggg 440

                                                                       
Query: 241 gtgggatattgttatacctggttttgcttatttgtagttgtttaaaatgggagtaacact 300
           |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgggacagcgttatacctggttttgcttatttgtagttgtttaaaatgggagtaacact 500

                                                                       
Query: 301 taattgtctgtcactgagttagaaaaagaaaagaaaaaaagaaagaaatctctgcctttc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 taattgtctgtcactgagttagaaaaagaaaagaaaaaaagaaagaaatctctgccttcc 560

                                                                       
Query: 361 tgatgattaagagcactggtcccaccctttcccatggacacagttcatgctgtcaggccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatgattaagagcactggtcccaccctttcccatggacacagttcatgctgtcaggccc 620

                
Query: 421 aggga 425
           |||||
Sbjct: 621 aggga 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)