BAC Information

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BAC

Clone NameMSMg01-389L18
Chromosome13 (Build37)
Map Location 70,687,117 - 70,687,517
singlet/doubletsinglet
Overlap genenone
Upstream geneSrd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042
Downstream geneBC018507, EG620473, Adamts16, 8030423J24Rik, LOC627230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389L18.T7 (MSMg01no389_l18.b1)MSMg01-389L18.TJ (MSMg01no389_l18.g1)
ACCAG491919AG491920
length784753
length of high quality
(start - end)
402 (74 - 475)511 (79 - 589)
definitionCHROMAT_FILE: MSMg01no389_l18.b1 PHD_FILE: MSMg01no389_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:26 2005CHROMAT_FILE: MSMg01no389_l18.g1 PHD_FILE: MSMg01no389_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATCCATTTACCCAAAGCCTTTTAATCCTATGCATTCCTTCTC
CCCCAACTCCTCCTAGATCCTCTCCCACATCCTTTTATTTACTGTTTATA
ATTAAGTTTGTTATTTGAAAGTGTCAGGCATGTAAACAATGTATTCTGAT
TCTCTTTGCCCATCTACTCTTTGCCCCTACCCCTCACAATCAATCCCTCT
CTTGAGATTTTTGACTTTCTTTTTGTTTGCCCTGCATTTAGTTTTAACCA
GAGCCACCTGTGTGACCACTGGATCGGAACTCTCAATGGTTACCAGTGAT
CTGTGAATGTTTTAAGATACATAGCAAAAAAAATCAGAAAAGCATAAAAA
GGTCTTGTAAAATGAACATATCCCAGTGGCATGTGTGGTCCATACTGTAT
GGTCTAACCTTGAACATATACCAAGTGAGAGAGAAATAACATACTATATG
TTAATATATATATATATATATACATATACATATATATATATATATATGCC
CCCTATCGCATTCCTCTATTTCACACGTCTACAATCACCCCACTCCCCTA
CTCTTACCTACCGCCCTTTCTCCCTGCCACCCCTTTGTGACTACCCTCTT
CCCCCAAACCCTCCTCTGCCCTTTTATCCCGTTTTTTTTCCCCTTCCCTT
TTTGCGCCCACCCTCCCTCTCCCCCTCCCTTCCCCTTCCTTTCCCCCCTT
TCTTCCCTTTCCCTCCCCCTTCACCTCCCTTTCG
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCACAGTGGCTGCTTCTAATA
GTTACTCCTCTTTCCCTGAGAGCTATCTTTAAGCCTTTGATGAAGGCTGC
CTCTTTAGTCAAAGTCCTCGAGAGGAGGGTAAATTGACTTAATTTTTTGT
TCTTCATTTTTTATATTATCCTTTATATCTTTATATTATCCTTTGTATCT
TTATATTTTATATTATCCTTTGTATCTTTATATTTTAGCTTCCTTTCTTT
TTCTCTTTTTATATTTCTTAAGTTACTTATTTTTCTGCGCGCGTCTTCTT
TTTCCTTTGTTTCTGATATGCCTTCCTGGTACTCCTACATAGTCGCTGCC
CTTCCTTAACAGCTGGTCCCACACAAACCCAGCAACAACTACCAGACCCA
CTGCGTAAGAAAGCATACCTCTCAGAGACTTACCTTAATTTCTTTATACT
TACCGGTACCACCGTTCCTCAGCTGAAGAGTTCTGAATCCACGCAGTTGA
ATCCTTCTCAGCAGTCTGTTTTGCAGGAACCTTTATTAACACCGCTCCCC
AGCTGAAGAGTTCTGAATCCACGCCGGAATCTTCTCAGCAGTCTGTTTTA
CGGGAACCTTTCTTAACCGCTCCTTCCCCGCGATGAAGTTCTGAATCCCT
CCTGGAATAGGGGGCCTTTCCTCTGGGCCGAAAAAGTTTCTTTCCCCGCG
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_l18.b1 MSMg01no389_l18.b1 CHROMAT_FILE:
MSMg01no389_l18.b1 PHD_FILE: MSMg01no389_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:26 2005
         (402 letters)



>mm_chr13_70686917_70687717
          Length = 801

 Score =  716 bits (370), Expect = 0.0
 Identities = 394/402 (98%), Gaps = 1/402 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccttttaatcctatgcattccttctcccccaactcctcctagatcctctcccacatcct 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 gccttttaatcctatgcattccttctctcccaactcctcctagatcctctcccacatcct 260

                                                                       
Query: 61  tttatttactgtttataattaagtttgttatttgaaagtgtcaggcatgtaaacaatgta 120
           |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 261 tttatttactgtttataattaagtttgttatttgaaagggttagacatgtaaacaatgta 320

                                                                       
Query: 121 ttctgattctctttgcccatctactctttgcccctacccctcacaatcaatccctctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgattctctttgcccatctactctttgcccctacccctcacaatcaatccctctctt 380

                                                                       
Query: 181 gagatttttgactttctttttgtttgccctgcatttagttttaaccagagccacctgtgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gagatttttgactttctttttgtttgccctgcatttagttttaaccagggccacctgtgt 440

                                                                       
Query: 241 gaccactggatcggaactctcaatggttaccagtgatctgtgaatgttttaagatacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaccactggatcggaactctcaatggttaccagtgatctgtgaatgttttaagatacata 500

                                                                       
Query: 301 gcaaaaaaaatcagaaaagcataaaaaggtcttgtaaaatgaacatatcccagtggcatg 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaaaaaa-tcagaaaagcataaaaaggtcttgtaaaatgaacatatcccagtggcatg 559

                                                     
Query: 361 tgtggtccatactgtatggtctaaccttgaacatataccaag 402
           ||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 560 tgtggtccatactgtatggtcaaaccttgaaaatataccaag 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 801
Length adjustment: 9
Effective length of query: 393
Effective length of database: 792
Effective search space:   311256
Effective search space used:   311256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)