Query= MSMg01no390_n08.b1 MSMg01no390_n08.b1 CHROMAT_FILE:
MSMg01no390_n08.b1 PHD_FILE: MSMg01no390_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:52 2005
(414 letters)
>mm_chr13_83569898_83570711
Length = 814
Score = 723 bits (374), Expect = 0.0
Identities = 404/414 (97%), Gaps = 1/414 (0%)
Strand = Plus / Plus
Query: 1 aatagatcagaatctaatccaaaagcaagaactgaattcattattttctagttgttcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagatcagaatctaatccaaaagcaagaactgaattcattattttctagttgttcata 260
Query: 61 caaagtaattgtgcatgctattttatataccaggaatgacatgacagtacatacttcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagtaattgtgcatgctattttatataccaggaatgacatgacagtacatacttcttg 320
Query: 121 ttactatgatggaaaaacaaactagtgcacatttggcccacagagaaacagtgggtcatt 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactgtgatggaaaaacaaactagtgcacatttggcccacagagaaacagtgggtcatt 380
Query: 181 ttattttgaagttaaacattaatttgtctgtttcatcatctatgtacttattataaatat 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ttattttgaagttaaacattaatttgactgtttcatcatctatgtacttattataaatat 440
Query: 241 tcatattatatttatacataaatatacatatcaaatagcataaagaaactttaacaataa 300
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatattataaatatacataaatacacatatcaaatagcataaagaaactttaacaataa 500
Query: 301 gtattttcacagaaaaaaaatcattatctgtggctcaatgaagcaacacatgaatctcac 360
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct: 501 gtattttcacagaaaaaaa-tcattatctgtggctcaatgaagtaatacatgaatctcac 559
Query: 361 tgagaaagggaaatagaataaatactgtggggaaatggatgggagtaggtgtgg 414
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 560 tgagaaagggaagtagaataaacactgtggggaaatggatgggagtaggtgtgg 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space: 326025
Effective search space used: 326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_n08.g1 MSMg01no390_n08.g1 CHROMAT_FILE:
MSMg01no390_n08.g1 PHD_FILE: MSMg01no390_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:52 2005
(430 letters)
>mm_chr13_83743841_83744670
Length = 830
Score = 797 bits (412), Expect = 0.0
Identities = 428/438 (97%), Gaps = 8/438 (1%)
Strand = Plus / Minus
Query: 1 agcttggtaattactaatacaccacacagacacaattacaccctgtgtgctgcataaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agcttggtaattactaatacaccacacagacacaattacaccctgtgtgctgcataaagg 511
Query: 61 aatcacttgtggtctgcatccattacaaagagcggtagggggccaacagggaaaccgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aatcacttgtggtctgcatccattacaaagagcggtagggggccaacagggaaaccgaca 451
Query: 121 aaatgctttacaagacggaaggagaccagaagagtcaatgtacacagatacaaggacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaatgctttacaagacggaaggagaccagaagagtcaatgtacacagatacaaggacctt 391
Query: 181 gattcttctagcaatgatttaagtctctttccatccattagtttcctttgtctcaggagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gattcttctagcaatgatttaagtctctttccatccattagtttcctttgtctcaggagt 331
Query: 241 ccttagctgcattacaggaactgaaaataacaatgctcagacccatgcaactcctgagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ccttagctgcattacaggaactgaaaataacaatgctcagacccatgcaactcctgagct 271
Query: 301 gcgctgacatctccacccctgttgctatgtttgacctgattatttagattacttaaccaa 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gcgctgacatctccactcctgttgctatgtttgacctgattatttagattacttaaccaa 211
Query: 361 aagaaaacga--------tgtgtgtgtgtgtgtgtgtgtgtgtgtaatccccacagcaaa 412
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 210 aagaaaacgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatcaccacagcaaa 151
Query: 413 aactgtctatgtgtctgt 430
||||||||||||||||||
Sbjct: 150 aactgtctatgtgtctgt 133
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
