BAC Information

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BAC

Clone NameMSMg01-391B07
Chromosome13 (Build37)
Map Location 58,615,320 - 58,615,743
singlet/doubletsinglet
Overlap geneLOC100041086
Upstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1
Downstream geneSlc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533, Agtpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391B07.T7 (MSMg01no391_b07.b1)MSMg01-391B07.TJ (MSMg01no391_b07.g1)
ACCAG492940AG492941
length758807
length of high quality
(start - end)
424 (44 - 467)244 (78 - 321)
definitionCHROMAT_FILE: MSMg01no391_b07.b1 PHD_FILE: MSMg01no391_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:11 2005CHROMAT_FILE: MSMg01no391_b07.g1 PHD_FILE: MSMg01no391_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTXXXXXXXXXXXXXXXXXXXXXXXXTTCCCCAGGATCCGCGGAATTCT
GTCTGTCTCTCTGTAACTTCCATAAACGATCCAGTCCGGTGTGACAAATA
TTTTCTAACCTGATACCATGACAATTCTTAGGGGCTGGTGCCAGAGAAGA
GGAAAAGCCTGTGGCTGGATGATATCCGTGATTGGATGATACGCTTATGA
GTGTTGTAGACCATCCATCTAAGCTGTCAGTCCCCAAACACCATGTTGAC
ATTGGCCCTGGTTTAAGTCTTTCTTCTCTTCCATCTCCTCCTCCTCCTCC
TCCTCTTCTCTAAAGCATCAGTGAGGAGAGGGGACGGTGCAGAGAGCTCC
ATGGATGCAGCTTTTTTAAGTAATCACCTGCCTGGAGTGGACCTCGGTGA
TGCATTTGGCTCACCTCAGCTCCTGTAAGTGACCCCGACTTGGGTGAGAT
CTTACTTTTGTCTGTCACCAACTCCTCATCAGGGTGAGCAGACACTTTTC
CCATCTTCCTACGAACATGGGTTCTCCCCCGGCACTTGTCCTTCCCTCCC
GCTGTCCCCCCCCCTAGAAGAGGGCGGACCACCCCCCCGGGTGAGTGGGG
CGACTCCTGCCCTGTCCTTGGATTCCCCCCCCTCCCCAACCGCAGTTTTG
TGTTCCCCCTCTCCTCTTTCCCCCTCTCCCCCGCTTTCTTTACTACCCAT
TCCCCCTCCCTTCCTCTCCCTATCCCCCTCCCCCCCCCCCCCTCTCCTTC
CCCTCTCC
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCCGTCTCTCCATTGTGCCTT
GTCATTTTATCTTCTCTAGCCTTTGAGTTGGTTTGCTTTTATGGGGTGGG
GGGCTAGGTCCAGCCCATTTTATGGGCGTTTTAGTCTCAATAACTTCTTG
TGAGGTAGCTGGTGTTCTCCCATTTCACAGATGGTGAAGCCGGAAGTGCT
GCATTCCAAGAAGGATGTGTTCTGAGTGCTCCAGGATACGAAAACCCAGT
TAGCGATGACCCAAATCCTGTTTTTTTTGCTATCAGAGAGGAGCGCAGTT
CTTTGCTCTAGGTTTTCCCGTTGGCGTAGTAGAGGTCTCGTACGGTATGT
ACCGCCTTGAGAGTGCCCATCCGCTCCCGCCGCCAGTGTTATGCCCGCCT
CATGTCTAACTGATCAGCTCACTCTCGCCCTCTCTCCCCCTCCCCTCCCT
TCCTCGCTTCCCGTCCCCCTCCTCTCGCCCTTTCTTCCTCCTTTTCCCCG
TTCCTCCCCCTCTCTCTCACTCCATGGTTTTCTCCCCCCTCGCCTCCCCC
ATTGTCCCCCCCCATTATCCCCCCCCCCCCTCCTTCCCTTCTTGCCCTCC
CTTTTCTCTTCGTCTCCCCCCCCCCCTCGCTCCTTATTTTCTTCCCCCTC
CCCCCTCCCCTTTCTTTTTTCCCCTTCCCTCCTTACTTCCTTTCCTTACC
CCTCCTTTGTCTTCCCTATTCCTTTCCCGGCCCCCCCCCACCGCCCCCTT
TTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_b07.b1 MSMg01no391_b07.b1 CHROMAT_FILE:
MSMg01no391_b07.b1 PHD_FILE: MSMg01no391_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:11 2005
         (424 letters)



>mm_chr13_58615320_58616143
          Length = 824

 Score =  571 bits (295), Expect = e-167
 Identities = 383/437 (87%), Gaps = 40/437 (9%)
 Strand = Plus / Minus

                                                                       
Query: 4   ttctgtctgtctctctgtaacttccataaacgatccagtccggtgtgacaaatattttct 63
           ||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||
Sbjct: 424 ttctgtctgtctctctgtaacttccgtaaacgatccagtccggtgtgatgaatattttct 365

                                                                       
Query: 64  aacctgataccatgacaattcttaggggctggtgccagagaagaggaaaagcctgtggct 123
           |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aacccgatatcgtgacaattcttaggggctggtgccagagaagaggaaaagcctgtggct 305

                                                                       
Query: 124 ggatgatatccgtgattggatgatacgcttatgagtgttgtagaccatccatctaagctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggatgatatccgtgattggatgatacgcttatgagtgttgtagaccatccatctaagctg 245

                                                                       
Query: 184 tcagtccccaaacaccatgttgacattggccctggtttaagtctttcttctcttccatct 243
           | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 244 taagtccccaaacatcatgttgacattggccctggtttaagtctttcttctcttccat-- 187

                                                                       
Query: 244 cctcctcctcctcctcctcttctctaaagcatcagtgaggagaggg-------------- 289
               ||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 186 ----ctcctcctcctcctcttctctaaagcatcagtgaggagaggggatgctgatgagcc 131

                                                                       
Query: 290 -------------gacggtgcagagagctccatggatgcagcttttttaagtaatcacct 336
                        ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 130 acactgccttgcagacggtgcagagagctccatgaatgcagcttttttaagtaatcacct 71

                                                                       
Query: 337 gcctggagtggacctcggtgatgcatttggctcacctcagctcctgtaagtgaccccgac 396
           || ||||||||||||| ||||||||||||       | ||||| ||||||||||||| ||
Sbjct: 70  gcgtggagtggacctcagtgatgcatttg-------taagctcttgtaagtgaccccaac 18

                            
Query: 397 ttgggtgagatcttact 413
           |||||||||||||||||
Sbjct: 17  ttgggtgagatcttact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)