BAC Information

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BAC

Clone NameMSMg01-391D14
Chromosome13 (Build37)
Map Location 94,593,003 - 94,593,242
singlet/doubletsinglet
Overlap geneArsb
Upstream geneEG624619, EG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh
Downstream geneCycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391D14.T7 (MSMg01no391_d14.b1)MSMg01-391D14.TJ (MSMg01no391_d14.g1)
ACCAG493048AG493049
length765830
length of high quality
(start - end)
42 (63 - 104)244 (76 - 319)
definitionCHROMAT_FILE: MSMg01no391_d14.b1 PHD_FILE: MSMg01no391_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:22 2005CHROMAT_FILE: MSMg01no391_d14.g1 PHD_FILE: MSMg01no391_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTNTTTGGT
TTGCCCTGAGACCCATTTTTTAATGGGGNTATTTGATTTTCTGGAGTCCA
CCTTCNGGAGTTCTTTACATATATTGGCATATTAGCCCCCTATCTGATTT
AGGATAGGTAAAGAGCCTTTCCCAATCTGGTGGCGGNCTTTTTGTNTTAT
TGATGGTGTCTTTTGCCTCTCCATACCCTTTGGAGTTTCATTAGGTCCCC
TTTATCGACTCTCGCTCTCACAGCACCCCCCATTGCTGTTNTGTTCAGGA
ATTTTTCCCCTGTTTTTTTATTTTCCCCGCTTTTNNCTACTTTCTCCCCT
ATAAGTTTCACCGCCTCCCGCCCCATGTGGAGTTCCTTAATCCANTTAGA
TTTGACCTTACCACCAGGAGATAGCAATGGATCAATTCGCATTCTTCTAC
ATGATCACCCCCAGTTGTGCCCGCATCATTTGTTGAACATGCTGGNNTTT
TTCCCCTGGATGTCTCTCCCTCCCCTGAAAAAGATTTTGTGATTTTTGGT
GTGTGGCCCCCTCCCTGTGCCCCCCCCCCTGTCCCCCTGGCCTAAATGGT
TGGNAAAATACCAGTCCCCTGCCCCCCCCCCCCCAATTGCTCTGGTTTTT
TGCCCTAAGCCCCCACTCCCTCCCTCCATCTAAGGTAATCCCTCCCCCCC
CCCCCTCAACTTTGTCCCCCCCCCTTTTTTTTGCCCTCCCCCACCCCTAT
CTCCTCCTTCCCCCT
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCATCAGTAGCTATCAAGAAGAAT
TTTGCTTTTTTTAAAAAAATAAAACCCATGCATTTTATACAGACAACACA
TTTCAGTTTAAATTCACTACATTTCGAGTACTCAATAGCCACACACAATG
GCCAGTATTTTGTTCAATTCAGTTCTGCAGGAAGTGAGCTGGAAGGCTGG
TCAGTGGTCATCAGAGAATGTTGCTAGAAACAGTTTGGGGGTGGGGGAGT
GTTTAAAACTTAATTTTTTTTTTTTGTCACGCCTTAGTGTCACTCGTCCT
TTCCTCCTTTTTTTTTCCTTCCCTCGATCGATCGCTCTTGCTTCCATCTC
CCCCCCCTTTTCCCCCCCCCGCTTTTTATTTAATTCTCCTCTCTTCACTT
TTTCACCCCTCATAACCCCATTTTTTTTTCCCTGTTATATCCTTTCCCTC
CTCCTCTCCTTTCCTCTTTCCCCTTTCCTTTACCCTTCTATAACCTCTTT
CCCTCTGTCTTCTCCCCCCTCTGCCCTTTTTTTTTCTCCTATTTTTCTGC
CCCTCTTTCTTCTCTTTTTATCTTTACTCCACCCACCCGTCCATTCTTAT
CTTCCTATTCCTCCCCTTTTCCTCCCCTCCCCCTTCCCTCCTTTCTTCCC
CTTTTCTTTTTCCCCTATTCCCTTTCCCCCATTTTCGCTTCCCCATTTTC
CGGTTCTCTCCCTTACTATTTCTCCCTTCTTTCCCCTTGCCTCTATTCCC
CTTTTCGTACCTCTTCCCCCCTTCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_d14.g1 MSMg01no391_d14.g1 CHROMAT_FILE:
MSMg01no391_d14.g1 PHD_FILE: MSMg01no391_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:22 2005
         (244 letters)



>mm_chr13_94592803_94593446
          Length = 644

 Score =  414 bits (214), Expect = e-120
 Identities = 233/242 (96%), Gaps = 6/242 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   catcagtagctatcaagaagaattttgc----tttttttaaaaaaataaaacccatgcat 58
           ||||| ||||||||||| ||||||||||    |||||||  |||||||||||||||||||
Sbjct: 201 catcaatagctatcaaggagaattttgcctttttttttt--aaaaataaaacccatgcat 258

                                                                       
Query: 59  tttatacagacaacacatttcagtttaaattcactacatttcgagtactcaatagccaca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttatacagacaacacatttcagtttaaattcactacatttcgagtactcaatagccaca 318

                                                                       
Query: 119 cacaatggccagtattttgttcaattcagttctgcaggaagtgagctggaaggctggtca 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cacaatggccagtattttgttcaattcagttctgcaggaagtgagctggaaggctggtca 378

                                                                       
Query: 179 gtggtcatcagagaatgttgctagaaacagtttgggggtgggggagtgtttaaaacttaa 238
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtggtcatcagaaaatgttgctagaaacagtttgggggtgggggagtgtttaaaacttaa 438

             
Query: 239 tt 240
           ||
Sbjct: 439 tt 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)