BAC Information

Click to search

BAC

Clone NameMSMg01-391E11
Chromosome13 (Build37)
Map Location 63,994,023 - 64,165,312
singlet/doubletdoublet
Overlap gene9330134C04Rik, EG665575, Hsd17b3
Upstream geneLOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik
Downstream geneSlc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391E11.T7 (MSMg01no391_e11.b1)MSMg01-391E11.TJ (MSMg01no391_e11.g1)
ACCAG493090AG493091
length759760
length of high quality
(start - end)
240 (63 - 302)236 (73 - 308)
definitionCHROMAT_FILE: MSMg01no391_e11.b1 PHD_FILE: MSMg01no391_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:26 2005CHROMAT_FILE: MSMg01no391_e11.g1 PHD_FILE: MSMg01no391_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,994,023 - 63,994,262)(64,165,077 - 64,165,312)
sequence
GAGGGCGCAACACGACCCCCAAATACCACACCACCGCGGAANNCCTTCCT
TACTGAAACAAAGCTTTCCTATACTGGTCCGGTATTTGCACCTCATTGGA
CTCTGGTTTTCAATGGTTCTTAGCCAGTTTTTTATGTGATTTTCAGCATA
GCTTTTCTTACTACACAGATGTACAAAATCAGATTTTCCAGTTGTCACCC
ACTGGCCATTCTGTTGTCTCTCGTCATTCTTTATGTCTAGAGAAAGAAGG
TAGCCCCCGCTTCTGTTCTGTGTACCTGTTTAGGTTTGCCTAGCTTTAAA
ACTTTATANTTTCAGTCCTTCTTGCCGGGACTAAAAAACTTGCATGTTTT
GGGCCAGCATTTTACTATTGTGCTACATCTTCAGCATTGCTGCTGCTACT
GCTCCATGTATATTTCTCATATGGGCAACGGTATATATGCACATAGTGTC
TTGTTGTCCTTGGGACAGTGAGCCCTAGGATCTCCCTGCTTCCTCCCCAG
CATCCGGATTACAAGTGTGCACCACACCTACCCCAGCTTTGATGAGTTCT
GCGGATCCCCCTTGCATCTTTTATTATTCCCACAACTATTAACGCTTTTA
TTTACTTCACAATCCTGCGCGCCCATGCGCTCCTGCCCCCTTTTTCCCAC
ACCACTTCTCTCAAAATTAATTTCCCCCCCTCCCCCACCCGATTTCGTGG
AATCCCACCCTATTTCCCTGACCTTTCCAATCGGCCTCCCCCCCTCCCCC
CCTCTTCCC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCTCCGCACCAATCCATCTTCTGGCAGAATGAGCACTCTGTT
TCCCTAGTAACTGCCCCTCTTCGTCTCTCCAATAGTCCACATTTGGGTCA
CCTTATTACAACAACTGTTAGGGTCTGGTTTTCATCAACTGTTACTCATT
AAGAGCAAATAGTTGATAGTTTAATTTTTCTAGAGTAGGAAGGTTTTAGC
TTTGTATTCTAATTTGCAGTTTCTTGCTACCCAACTCTGGGCATCTAACT
GGGAAGATTATTGATANTTCTCCCAGTAACTGAGAGGCTGAGGCAGGAGG
ATTTTCTCAAATTCAAGATTAGTTTGGGTTCCATAGTAAGACTGCGGCTA
GCCTTGGCCATACGCAACATATATATGCTTCAAAAAATGAAACGAATAAC
AAAAACTGAATTTCACAAGATGTTAGCAAGAGCCCTGAATAGCATACGGG
CGCCAGAGTGAAGACATTGCATCTAGGATGGATTGTCCCATGCCACCTAT
GCCCCTGCTGCCACAGGTTATCTCTGTCAGTGCTCCGTGTCCCCCCTCGT
TTCCTTCTTTACCCTACCCTCCCTCCCTTCCCCCCTTCGTTCTTTTTTTT
TTTTCTTCATTTCCTTAATTTCTCACCCCCTCCCCCCCCTCCTTTCCACC
CTCCCTCTCCGTCCCCTTCTCCCCCCCTTCCCCAATCCACTCCCTTCTCC
CTTTCTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_e11.b1 MSMg01no391_e11.b1 CHROMAT_FILE:
MSMg01no391_e11.b1 PHD_FILE: MSMg01no391_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:26 2005
         (240 letters)



>mm_chr13_63993823_63994462
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctttcctatactggtccggtatttgcacctcattggactctggttttcaatggttctta 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctttcctatactgttccggtatttgcacctcattggactctggttttcaatggttctta 260

                                                                       
Query: 61  gccagttttttatgtgattttcagcatagcttttcttactacacagatgtacaaaatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccagttttttatgtgattttcagcatagcttttcttactacacagatgtacaaaatcag 320

                                                                       
Query: 121 attttccagttgtcacccactggccattctgttgtctctcgtcattctttatgtctagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttccagttgtcacccactggccattctgttgtctctcgtcattctttatgtctagag 380

                                                                       
Query: 181 aaagaaggtagcccccgcttctgttctgtgtacctgtttaggtttgcctagctttaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaaggtagcccccgcttctgttctgtgtacctgtttaggtttgcctagctttaaaac 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no391_e11.g1 MSMg01no391_e11.g1 CHROMAT_FILE:
MSMg01no391_e11.g1 PHD_FILE: MSMg01no391_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:26 2005
         (236 letters)



>mm_chr13_64164877_64165512
          Length = 636

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcttctggcagaatgagcactctgtttccctagtaactgcccctcttcgtctctccaa 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 catcttctgtcagaatgagcactctgtttccctagtaactgcccctcttcgtctctccaa 377

                                                                       
Query: 61  tagtccacatttgggtcaccttattacaacaactgttagggtctggttttcatcaactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tagtccacatttgggtcaccttattacaacaactgttagggtctggttttcatcaactgt 317

                                                                       
Query: 121 tactcattaagagcaaatagttgatagtttaatttttctagagtaggaaggttttagctt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 316 tactcattaagagcaaatagttgatagtttaatttttctagagtaggaagggggtagctt 257

                                                                   
Query: 181 tgtattctaatttgcagtttcttgctacccaactctgggcatctaactgggaagat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgtattctaatttgcagtttcttgctacccaactctgggcatctaactgggaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)