BAC Information

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BAC

Clone NameMSMg01-391F08
Chromosome13 (Build37)
Map Location 110,316,126 - 110,316,543
singlet/doubletsinglet
Overlap genePde4d
Upstream geneEG668144, LOC621663, LOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391F08.T7 (MSMg01no391_f08.b1)MSMg01-391F08.TJ (MSMg01no391_f08.g1)
ACCAG493132AG493133
length743774
length of high quality
(start - end)
241 (64 - 304)415 (80 - 494)
definitionCHROMAT_FILE: MSMg01no391_f08.b1 PHD_FILE: MSMg01no391_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:30 2005CHROMAT_FILE: MSMg01no391_f08.g1 PHD_FILE: MSMg01no391_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGAAGGTAAANGAACACCATATCCACAACACCGCGGAAATCCT
GGGCATCACCCCACCCTATTGAGCAGATTTTCTTCACGACATAAAGATGA
ACTTTCATGAATTAATGCTGTTTAGATGAACTAATACTTTTATAGAGTTC
CTGATTTGATTCAAATAATCTTAAGAAGAAAGTTTTAAGAGATGGTTTTA
GTCATTTGCTAGAAAGACGTAAGAAAATTACAATCAAGAATAGAGTGTGC
CCACTCCTCTCAATAGTAAATAAAGGCTGCGTAATAAGAATTACCATGAG
CTTTTACATTATTCCATATTTACATATAGGCTTGGGCAAATTTGGGTTCA
AGGATTATCATCCAGGTCCAAGGATGACGCCCCAGGTGTGCCTTATGATA
ACGCCCAGCCCCCGCGCCACCTGTTGCTTTGAACCTATCCCGAGCCTCAA
ACCATGAACCCACCGGTTTTGACCCCACAATTCCTTTTCCCCTTTTGGCC
CCCCCCCATTTTTATGCCCCCCTTTCCCCCCCTCTGGGGGAAATTTTTCC
ACCCACCCCTTTTTCCCCCTCACCGCCCCCTAAACACCCCCCCCTTCACT
TTGTGTTCCCCCCTCTCCCCACACCTTTTTTTTATTCCCCCTATCCCTCC
CCTCCCATTTTTCTTCTTCCCCCTCCCCTTCCCCTCCCTTTATCCCCCCC
CCTTATCTTTCCCCCCCCCCCCATTTACATCCTTCCCCCCCCG
NNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTAGCAAACTGAAATAATG
AAAAAAGACAAGTTGGTAATGGCAGAAGAAGCTGTAATATGAGAATAAAT
AAGAATAAGTAATAGTCCTGAAATGACAGTTGGGAAAAATATCTGAAGGG
AGGATTATAAATGTGACTGGCAGATAATAATTTCTGGACTCATTTTGAGA
AAGGGCTCATGGTTCTGTCGCAGAGAAGACAGGTAGAGACAACTGCATTT
TAGACGGATAAACCTAAAATAGACAGATGGTACCTGGACTCTTGCGGACG
AAGCTCATAGTCATTGGATAGTTCCATCAGGAAAGTTAAACATAGGTTCT
GAACTGTATAAACAGGAGGTGGAGAAAATACGGCATACGTAGATAGGATG
GACTTGCAAAAAGGAAGCCTCTGAAGTGTAGAGGCAGGCTAATGGGCTGT
GAAGTCACTAGGAGAAAAACACGTTCAGTGGAAACCATTTTAAACGTTAG
TGCCCTCCAGAGAAAGCCCAGTTTCTGTGGGTGGATGAAGGAGCTGAACC
AGCCTTTTCCTAGGGGACCAAGAAGGACTTATATGGGTCCCTCTATTCTC
ACTTACTTTAAAATTCCCAAATACTGTGTTTTTTTAAAAACGAACTTTAC
TTTCTTGGTTGAAAATTAACGGGAGCCCTATTGTCGGTTTCTGCCCTTTA
CCCCAAAGGCCCCCTCCGTGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_f08.g1 MSMg01no391_f08.g1 CHROMAT_FILE:
MSMg01no391_f08.g1 PHD_FILE: MSMg01no391_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:31 2005
         (415 letters)



>mm_chr13_110315926_110316743
          Length = 818

 Score =  746 bits (386), Expect = 0.0
 Identities = 409/418 (97%), Gaps = 3/418 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtagcaaactgaaataatgaaaaaagacaagttggtaatggcagaagaagctgtaata 60
           ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tggtagcaaaccgaaataatgaaaaaagacaagttggcaatggcagaagaagctgtaata 260

                                                                       
Query: 61  tgagaataaataagaataagtaatagtcctgaaatgacagttgggaaaaatatctgaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagaataaataagaataagtaatagtcctgaaatgacagttgggaaaaatatctgaagg 320

                                                                       
Query: 121 gaggattataaatgtgactggcagataataatttctggactcattttgagaaagggctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggattataaatgtgactggcagataataatttctggactcattttgagaaagggctca 380

                                                                       
Query: 181 tggttctgtcgcagagaagacaggtagagacaactgcattttagacggataaacctaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttctgtcgcagagaagacaggtagagacaactgcattttagacggataaacctaaaa 440

                                                                       
Query: 241 tagacagatggtacct---ggactcttgcggacgaagctcatagtcattggatagttcca 297
           ||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tagacagatggtacctagtggactcttgcggacgaagctcatagtcatttgatagttcca 500

                                                                       
Query: 298 tcaggaaagttaaacataggttctgaactgtataaacaggaggtggagaaaatacggcat 357
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tcaggaaagttaagcataggttctgaactgtataaacaggaggtggaggaaatacggcat 560

                                                                     
Query: 358 acgtagataggatggacttgcaaaaaggaagcctctgaagtgtagaggcaggctaatg 415
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 acgtagataggatggacttgcaaagaggaagcctctgaagtgtagaggcaggctaatg 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 818
Length adjustment: 9
Effective length of query: 406
Effective length of database: 809
Effective search space:   328454
Effective search space used:   328454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)