BAC Information

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BAC

Clone NameMSMg01-391F19
Chromosome13 (Build37)
Map Location 52,140,141 - 52,140,459
singlet/doubletsinglet
Overlap genenone
Upstream geneSpin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
Downstream geneLOC100040321, Diras2, LOC100040572, Syk, Auh, Nfil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391F19.T7 (MSMg01no391_f19.b1)MSMg01-391F19.TJ (MSMg01no391_f19.g1)
ACCAG493153AG493154
length745793
length of high quality
(start - end)
340 (66 - 405)320 (73 - 392)
definitionCHROMAT_FILE: MSMg01no391_f19.b1 PHD_FILE: MSMg01no391_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:33 2005CHROMAT_FILE: MSMg01no391_f19.g1 PHD_FILE: MSMg01no391_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGCGCGCTAAANGATCACTATTTTCAGACCATCCGCGGAATTCAG
CCATGTCCCCATCCTGCTTTATGCTTTCTTTGTGGGGAGACTTTTTATTA
CGACTTCAGTCTTGTTGCTTTTATGGGTCTGTTGATCTTGTCGGTATGCT
GTTGGTTTAATTTTGGGAGATCTCTCTCACGTGTCCAGAGGTTTGTTCAT
CTCTTGTAGATTGTCCAGCTCTTTAGAAATACATGTTTCCCAAAGCATTC
CCTAACAATTCTGTGGATTTCACTGGTGTCCAGTGAAATGTTCCTCTCTT
CATCTCTAGTTTTTTTTTTTCGGACCCCTTCCAGTCTTGGCTAACTTGGC
TGATTTGTTGTTGATCTTGTTTTATTTTCTCAAAGAACCAGTTCCCTGTT
TCATTGACCCCCCCGCATTTTTTGTCCCTATTTGTTGGGACTGTTCCTTG
CTGTCAGGCCTCCCGAGTGTCCCAGTCCTATGACCCAGACCTGTTCTGTA
CGACGCGGCTTCGCCCCCCCCCCTGAACCCCCCAAATATTACTGGCCTTT
TCTCTCCTTCCCATCCGCCCCCGCATTTAATTCTCCCCCACAATACCCCC
TCCTTTTTTATATCACTATCCCTCCCTTTCCCCCCTCTGGCCTTTTTTTT
CTTCTTCCTCCCACTTTCTTCTCCCTCCCCCTTCCTTCCCCCCCCCCCGC
CCTTTTCATTCTTCTCCCCCCCCGCTCCCCCCTTTCTCTTCCTCG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGATTAGTGAGTAGTCACTAATGGTT
ACTAGGTCAGAGAATAACTCACCTTGTCTTGCAAATCCTTAGTGTACACA
CACCCATATAGCCAGCTTGCTACCAGCCCCAGACAGCTCCATACAAATAG
ACACAGGTGACCTCAGGTGACATGTGTCCAGATAGCATCTGCAACCTCTG
AAAGTTGCATAGCTTTGACTATTGGGTGACCCCGACTTAGAAGAAACCCT
GTGCATTATTATTATAATTTTTGAGATGATGTGGTATACCGTACCCCCCC
CCAAATAGAACATGGACATAACAAGGCTGATGCACTGCTTATAGCTGAGA
ACTCTTCCGTCCTCTTGTTGGCTACACACTGACCAATTGTAGGTCTTTGT
GTTAACACATCATTTACTGCAAAAAAAAAATAACCTTCTTTGAGGGGGGT
GAGAGATTCACTACTCCTTGGGACTGATCCCCACTCTGCGGCCTATTCAC
ATTCTGCCCCCTTATCATAATAATATTTAAAGATTTTCCCCCCCGTCCCT
ATTGACCCCACCCTTTTTCCCCCTCCTGGTCTTGTTTATTTTACCACATA
TATTTTTTTTCCTTCCCTCCCCCGTTCCTTTTTTTTCTCCACCCCTCCTC
CCCTTTTGTTTTCCCCTTTTCCATTTCTTCCCCCCCTTCTCCTCCTTTTT
CTCCTCTTTCACATCCCCCCCCCCCCCCACCCTCCCTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_f19.g1 MSMg01no391_f19.g1 CHROMAT_FILE:
MSMg01no391_f19.g1 PHD_FILE: MSMg01no391_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:33 2005
         (320 letters)



>mm_chr13_52139941_52140664
          Length = 724

 Score =  520 bits (269), Expect = e-152
 Identities = 305/323 (94%), Gaps = 12/323 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggattagtgagtagtcactaatggttactaggtcagagaataactcaccttgtcttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 caggattagtgagtagtcactaatggttactaggtcagagaataactcaccttgtcttgc 460

                                                                       
Query: 61  aaatccttagtgtacacacacccatatagccagcttgctaccagccccagacagctccat 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 459 aaatccttagtgtacacacacccatataaccagcttgctaccagccccagacagctccat 400

                                                                       
Query: 121 acaaatagacacaggtgacctcaggtgacatgtgtccagatagcatctgcaacctctgaa 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acaaacagacacaggtgacctcaggtgacatgtgtccagatagcatctgcaacctctgaa 340

                                                                       
Query: 181 agttgcatagctttgactattgggtgaccccgacttagaagaaaccctgtgcattattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agttgcatagctttgactattgggtgaccccgacttagaagaaaccctgtgcattattat 280

                                                                       
Query: 241 tataatttttg----agatgatgtggtataccgtacccccccc----caaatagaacatg 292
           || |||    |    ||||||||||||| ||||||||||||||    |||||||||||||
Sbjct: 279 tagaat----ggaagagatgatgtggtacaccgtacccccccctccccaaatagaacatg 224

                                  
Query: 293 gacataacaaggctgatgcactg 315
           |||| || |||||||||||||||
Sbjct: 223 gacacaagaaggctgatgcactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 724
Length adjustment: 9
Effective length of query: 311
Effective length of database: 715
Effective search space:   222365
Effective search space used:   222365
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)