BAC Information

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BAC

Clone NameMSMg01-391J12
Chromosome13 (Build37)
Map Location 47,642,406 - 47,820,685
singlet/doubletdoublet
Overlap genenone
Upstream geneCap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391J12.T7 (MSMg01no391_j12.b1)MSMg01-391J12.TJ (MSMg01no391_j12.g1)
ACCAG493329AG493330
length751835
length of high quality
(start - end)
244 (70 - 313)134 (75 - 208)
definitionCHROMAT_FILE: MSMg01no391_j12.b1 PHD_FILE: MSMg01no391_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:52 2005CHROMAT_FILE: MSMg01no391_j12.g1 PHD_FILE: MSMg01no391_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,642,406 - 47,642,645)(47,820,552 - 47,820,685)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAACATCCGCGGAATTCAGCA
TTTTTTGCCTAACAGTCTAGCAGATGCGAGGTTTAGGCAATTTGAACTTT
TAGAAATTTTCTTCTTTTCTGAGATGAAATAAGTCTCCATGATCACTAGT
TATGATGTTTGGGATCAAATGCATGAAACTGTAGGTAATCTTTACTTCAC
AGCATGTATATAAGCCAAACATTTATATGATGGTTGCATTATATTACTTG
TCTGTGACTAAGTCTTGTAATGTAGGTAGTTAGGTATGCTTCCCATATAA
TGAGTATAATTTGTAGTTCGGGTGATGACTTGGTGGGTACAATGCCTTCC
TTATTAGTCTGAGGACTGGAGTTCAGAAGTTAAAGCCCACATACATGCCA
GGTACCCCCCCCATCCTTTGTGCAACTTTAGAGATAGGTGATCTCTGGAG
AAAGCTGTCTAGCTACATTAACTGGATAAGCAAGTCCTGTGTTCAATCAG
GTACACAGCAATTGAGAGGCGCCCAGAGAGAGACAGACAGCCAGCCCCCC
TCCTTTCTTTCTCTCCCCCCCTCCCCTATCCCTCCCCCTTCCCCTTTTTT
TCCCCCCCCTTTTTTCTTTCTCCCCCCCCCCCCCCCCCCTTTTTTTTTTC
TTTTCCCTCTCCCTTCCTCCATTTTTTTTCTTCCCCCCCCTCCCTCCCTT
CTTTTCCCCCCCCTTTTTTTCCTTTTTCCCCCTTACCTCCCTCCTCCCCC
C
CCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTATCAACACCATTCTTTAGAGNGTAAGAATGGTGAATT
TAGTTTTTGATATTTATGATAACTTTCAAATACCACAGGGGTATAAATTA
TGAGAAGGAAAATATGAGGAGTTTGGAGGCAATTTATGATGTAGTAATAA
TCTTGGCACAATACATCCATTGGAGTATTTACCACACATACCCGTTTTGT
TTTCTAACGCATTTGCCAACATGTACTGACCAACCCGGACACATTACCTT
CCACGGGGAGCCTTTGCCATGATTTGCGCGCACACGACCACACACGAGGC
CCGGAATTTTTTCTTCTCCCCCCCCTCGGATGTGTCTCTGTCTTTACCCC
CCGTTTTCGTCAACTCCCCCCCCCTTCATATTCGCTCTCCGTTCTTCATC
CCGCCTCTTTTCCCTTTTTTCTTTCCCTTACTCCCTTCCCCTCTCCCCTC
GTTTCTCCCTCCCCATCTCTTCCCCCTTCTTGCCTTCCTTCCCCTCCTCC
CCTCCCACCCCCTCTTTTTTTTCCCTCTTTTTCCTCCCCCTCTTCCTCCC
TTTCTTCCTTTCTTCCTCCCTCTCCTCTCTTTTTCTTTCTCTTTCCTCCC
CGTTTCCTCCCCCCCCCTTCCCTTCCAATCCATGCCCCTTTCGACTTTCC
CTCTTTTTTTGTTTCCCCCCTCTCCCTCCCCCCCCCCTTACCCCTTTTCC
CTCTTTTTCCCCTTTTTCTCCTTCCCTCTCCTTTCTCTCGTTTTCTTCCC
CTTTCCTATACTTTTTTACCCCCCTTCTTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_j12.b1 MSMg01no391_j12.b1 CHROMAT_FILE:
MSMg01no391_j12.b1 PHD_FILE: MSMg01no391_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:52 2005
         (244 letters)



>mm_chr13_47642206_47642849
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagatgcgaggtttaggcaatttgaacttttagaaattttcttcttttctgagatgaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 gcagatgcgaggtttaggcaatttgaacttttagaaattttcttctttactgagatgaaa 260

                                                                       
Query: 61  taagtctccatgatcactagttatgatgtttgggatcaaatgcatgaaactgtaggtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagtctccatgatcactagttatgatgtttgggatcaaatgcatgaaactgtaggtaat 320

                                                                       
Query: 121 ctttacttcacagcatgtatataagccaaacatttatatgatggttgcattatattactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttacttcacagcatgtatataagccaaacatttatatgatggttgcattatattactt 380

                                                                       
Query: 181 gtctgtgactaagtcttgtaatgtaggtagttaggtatgcttcccatataatgagtataa 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgtgactaagtcttgtaatgtaggcagttaggtatgcttcccatataatgagtataa 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no391_j12.g1 MSMg01no391_j12.g1 CHROMAT_FILE:
MSMg01no391_j12.g1 PHD_FILE: MSMg01no391_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:52 2005
         (134 letters)



>mm_chr13_47820352_47820885
          Length = 534

 Score =  253 bits (131), Expect = 2e-72
 Identities = 133/134 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttagagngtaagaatggtgaatttagtttttgatatttatgataactttcaaatacc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tctttagagtgtaagaatggtgaatttagtttttgatatttatgataactttcaaatacc 275

                                                                       
Query: 61  acaggggtataaattatgagaaggaaaatatgaggagtttggaggcaatttatgatgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 acaggggtataaattatgagaaggaaaatatgaggagtttggaggcaatttatgatgtag 215

                         
Query: 121 taataatcttggca 134
           ||||||||||||||
Sbjct: 214 taataatcttggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)