BAC Information

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BAC

Clone NameMSMg01-391M22
Chromosome13 (Build37)
Map Location 5,088,316 - 5,088,724
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391M22.T7 (MSMg01no391_m22.b1)MSMg01-391M22.TJ (MSMg01no391_m22.g1)
ACCAG493492AG493493
length768771
length of high quality
(start - end)
409 (63 - 471)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no391_m22.b1 PHD_FILE: MSMg01no391_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:08 2005CHROMAT_FILE: MSMg01no391_m22.g1 PHD_FILE: MSMg01no391_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTAAACGACTCCTATAGTTCGACAACCCGCGGAATTCCTAATTTT
CTGCTCTGCAATATGAAAGAAATTTTCTTCTTTCCAGTGCTTAGTGCATT
GGAATCTAGGTTAAAACATTACATTCTCCTCAATCCATAACCTGACTTTG
TGGGATTTATGTGACATGACTTCTTAGCAGAACCCTTCCTTAATATAAAA
CGGAAGTAATGAGTTTCTTATCTTTGCTTATGTCTTTCAGCTAAATGGGA
ACCAGCAGAGACAGGACGGGTCTCAATGGAACTGGACTGGATGGACAAAG
TAGACACTATTTGCTTTGGGAAAGAACTGAATCTCCTGTTTTTTTGGCTT
GAACACTGGACTATTCACATTGAGGAAATAAGAAGTCTACAAAACTACTT
TAACTCACAGATTGGTAGAAACATAAGTATATATTTTAAAGATTTCACCT
GATATCACATATATGCAAAATCAATTGCGAGTTTAATAATAAATGAAACT
AATTCATTTTCCTCCAAAATATTTTAAATCCTTCCAAATCCAATTTAATA
TCCTTATTGCCTAAATTAGCACCATATAGATATTCCATGTGTATTACCCA
ATTTAGCATTCCTGCTAAGGTTTAAGCCTGGGCCACGCGCCCAACTGTTT
TTTAACCCACAAAAAGGGCACCCCGGGGACAGCCTCCCCCCTTAAAAAAA
AAAACCCCCAAACGGTCCCCCGTCCCCTTAAAAAAAAATCACCCCCCCGC
CACAATCTCCCCCCCCCT
NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCA
TGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATG
ATCATGTGATTTTTGTCTTTGAGTTTGTTTATATGATGGATTACATTGAT
GGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GTTCTGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGA
ATTTTATTGAGGATTTTTGTATTGATATTCATAAGAGAAATTGGTCTGAA
GTTCTCTATCTTTGTTGCATCTTTCTGTGGTTTAGGTATCAGAGTAATAG
TGGCTTCATAAAATGACCCCCCCCACAGTACCTTCTACTTCTATTTTGCG
AAATAGTTCGTGCAGAATTGCAATTAGATCTTCTTTGACCGTCTGATATA
ACTCTGCCCTAAACCCATCCTGCCCTGTTCTCTCTTCCGCTCGTCTTACC
ATCACATCCTCCCTCACCTTTCTTTCCCGACCTCCCATCTTTTCTTCCCC
TCCCCTTCCCTTCCGTCTTCTCCTTTCTTCCTTGCCTCACCCCCCCACCC
CCCTCTTTTTTTTCTTTTCCTTCCCCCCCCCCCCCCCTTTCTTTCCCCCT
CCCCCTTTTCTCCCCCCCGTCCCTTTCTCTCCCCTTTTCTTCCCCCCCTC
CCTTCCCCCCTTTTCTCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_m22.b1 MSMg01no391_m22.b1 CHROMAT_FILE:
MSMg01no391_m22.b1 PHD_FILE: MSMg01no391_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:08 2005
         (409 letters)



>mm_chr13_5088116_5088924
          Length = 809

 Score =  683 bits (353), Expect = 0.0
 Identities = 395/409 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaagaaattttcttctttccagtgcttagtgcattggaatctaggttaaaacattac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 609 atgaaagaaattttcttctttccagtgcttagtgcattggaatctaggttaaaacattgc 550

                                                                       
Query: 61  attctcctcaatccataacctgactttgtgggatttatgtgacatgacttcttagcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 attctcctcaatccataacctgactttgtgggatttatgtgacatgacttcttagcagaa 490

                                                                       
Query: 121 cccttccttaatataaaacggaagtaatgagtttcttatctttgcttatgtctttcagct 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 489 cccttccttaatataaaacggaagtaatgagtttcttgtctttgcttatgtctttcagct 430

                                                                       
Query: 181 aaatgggaaccagcagagacaggacgggtctcaatggaactggactggatggacaaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 429 aaatgggaaccagcagagacaggacgggtctcaatggaactggactggatggacacagta 370

                                                                       
Query: 241 gacactatttgctttgggaaagaactgaatctcctgtttttttggcttgaacactggact 300
           ||||||| | ||  ||||||||||||||||||||||||| ||||||||||| | ||| ||
Sbjct: 369 gacactactagcactgggaaagaactgaatctcctgtttctttggcttgaagattggtct 310

                                                                       
Query: 301 attcacattgaggaaataagaagtctacaaaactactttaactcacagattggtagaaac 360
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 309 attcacattgaggaaataagaagtctacaaaactactttaattcaaagattggtagaaac 250

                                                            
Query: 361 ataagtatatattttaaagatttcacctgatatcacatatatgcaaaat 409
           |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ataaatatatattttaaagatttcacctgatatcacatatatgcaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)