BAC Information

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BAC

Clone NameMSMg01-392D05
Chromosome13 (Build37)
Map Location 52,422,251 - 52,610,081
singlet/doubletdoublet
Overlap geneLOC100040321, Diras2
Upstream genePpia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
Downstream geneLOC100040572, Syk, Auh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392D05.T7 (MSMg01no392_d05.b1)MSMg01-392D05.TJ (MSMg01no392_d05.g1)
ACCAG493790AG493791
length742753
length of high quality
(start - end)		529 (73 - 601)379 (79 - 457)
definitionCHROMAT_FILE: MSMg01no392_d05.b1 PHD_FILE: MSMg01no392_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:39 2005CHROMAT_FILE: MSMg01no392_d05.g1 PHD_FILE: MSMg01no392_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,609,553 - 52,610,081)(52,422,251 - 52,422,629)
sequence
CCCTCCCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTCATGATTTTTCATTTCAACTCCCCATCCTTGATAT
CCTTGCATCCCAGAAAACACCTCTCCCCAGAATACAAGTATCCTAGGGTA
CTCAGGTCCCTCATCTAAAATGTAGAGTGTTTGCTTAGGACAGCCACATA
CCTTTCTATAGACTTTCAACTGTATGCTCAATATAATGTCAATCATGTTA
CACTGTGTTGCTCAGAGAAGAAAAACAAATGAATGAATATGTATACTATG
TATATTAAATATATACAATCTTTTTCTTGACATCTTTGATCTGAGGTTGG
TTAAATCTGAGGATGTAGACACCAAGAGGGCCTGCTGTGTAGTCTTTGTA
GACAGGAGTCAGTCCTCAGGAGATGGGCATTCAATCAGGTGAGAGGACTT
GAGAATAACCATTGAAATACCACCCATATTAACCAAAATTATGTTACAAT
AATGAAGTCCCTAAGGCAGGCTACTTTCTTTAGCCCATGGGTCTTGAGGT
GCATGGTGGAGAGGCACATCTGGCAATAGCTTTCTTGATGGTGGCATCCA
GAGGTGGTGCGGGGCATAGCATATATGCACATGTGACATGGTTTCTGTTC
TTCTTATAACCCACCCCCGTCAGGTGGAGGGAGCTACCTTGCTTTCACAT
TTTCCCAAATTTCCCTCCTGGAACCCTAATGCTAGAATGGGG

CCCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTCCTCTTTCCACTGTGG
CTACTGTGAGAAAACCTCTTTGTGCCACTGCTTTTCAATCTTAATTTTTC
TTTTTAAAACTGGTGGCTGAACCGGGAGTGTTAGGGCTGACAGTGTCCCT
AAGGATTCTGGTGACAGGCAGAGCTGACAAGCTATCACTAAAGGCAAGTG
ATAGCGAGTGACTGGATCTGCCTCCAGGACACACAAAACGGCTCGGTTCC
CTTCAGCCTTATATGCAGATGCTGAGGTGCTTAGTGGTTTTATATCCTCT
TGTGAGTCCACGTCTAGAAACTCAGACCAAAACAAAAGGTTGTTCCTTTT
CCACTTCCCACACTTCCAGTTAGCTGTGGTCTCTGTGGTGTGAAACGTTC
CAGAAACAAACCCGTCCCATGCATTTCGCGTCGCACTGTTCAGCTGCCAT
GCCTCTATGCTGCCTCGGTGTGAACAGACCTTCGTCTCTATTCATGCTAA
TTATGTTCCCAGGCCATTTGTCTCTTAAGTTCCATTCTGTGTTGCCAACT
TGTGCTACTCTTGACGGGTAAATCTGTGGTCCTCCACCCCCGGTTTCTAC
TTCTCCTCCCCTCTCTCTTACCTTCCCCCCCTCTTTCTCCTCCTATTTCC
CAATTCCACTTTACTCACTCTCTGCCCTCTTCTTCTCAGTTTGTTTTCCC
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_d05.b1 MSMg01no392_d05.b1 CHROMAT_FILE:
MSMg01no392_d05.b1 PHD_FILE: MSMg01no392_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:39 2005
         (529 letters)



>mm_chr13_52609353_52610281
          Length = 929

 Score = 1007 bits (521), Expect = 0.0
 Identities = 527/529 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcatttcaactccccatccttgatatccttgcatcccagaaaacacctctccccagaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 729 tttcatttcaactccccatccttgatatccttgcgtcccagaaaacacctctccccagaa 670

                                                                       
Query: 61  tacaagtatcctagggtactcaggtccctcatctaaaatgtagagtgtttgcttaggaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tacaagtatcctagggtactcaggtccctcatctaaaatgtagagtgtttgcttaggaca 610

                                                                       
Query: 121 gccacatacctttctatagactttcaactgtatgctcaatataatgtcaatcatgttaca 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 609 gccacatacctttctatagactttcaactgtacgctcaatataatgtcaatcatgttaca 550

                                                                       
Query: 181 ctgtgttgctcagagaagaaaaacaaatgaatgaatatgtatactatgtatattaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctgtgttgctcagagaagaaaaacaaatgaatgaatatgtatactatgtatattaaatat 490

                                                                       
Query: 241 atacaatctttttcttgacatctttgatctgaggttggttaaatctgaggatgtagacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atacaatctttttcttgacatctttgatctgaggttggttaaatctgaggatgtagacac 430

                                                                       
Query: 301 caagagggcctgctgtgtagtctttgtagacaggagtcagtcctcaggagatgggcattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 caagagggcctgctgtgtagtctttgtagacaggagtcagtcctcaggagatgggcattc 370

                                                                       
Query: 361 aatcaggtgagaggacttgagaataaccattgaaataccacccatattaaccaaaattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aatcaggtgagaggacttgagaataaccattgaaataccacccatattaaccaaaattat 310

                                                                       
Query: 421 gttacaataatgaagtccctaaggcaggctactttctttagcccatgggtcttgaggtgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gttacaataatgaagtccctaaggcaggctactttctttagcccatgggtcttgaggtgc 250

                                                            
Query: 481 atggtggagaggcacatctggcaatagctttcttgatggtggcatccag 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atggtggagaggcacatctggcaatagctttcttgatggtggcatccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no392_d05.g1 MSMg01no392_d05.g1 CHROMAT_FILE:
MSMg01no392_d05.g1 PHD_FILE: MSMg01no392_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:39 2005
         (379 letters)



>mm_chr13_52422051_52422829
          Length = 779

 Score =  717 bits (371), Expect = 0.0
 Identities = 377/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcttcctctttccactgtggctactgtgagaaaacctctttgtgccactgcttttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcttcctctttccactgtggctactgtgagaaaacctctttgtgccactgcttttcaa 260

                                                                       
Query: 61  tcttaatttttctttttaaaactggtggctgaaccgggagtgttagggctgacagtgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttaatttttctttttaaaactggtggctgaaccgggagtgttagggctgacagtgtcc 320

                                                                       
Query: 121 ctaaggattctggtgacaggcagagctgacaagctatcactaaaggcaagtgatagcgag 180
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 321 ctaaggattctggtgacaggcagagatgacaagctatcactaaaggcaagtgatagtgag 380

                                                                       
Query: 181 tgactggatctgcctccaggacacacaaaacggctcggttcccttcagccttatatgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgactggatctgcctccaggacacacaaaacggctcggttcccttcagccttatatgcag 440

                                                                       
Query: 241 atgctgaggtgcttagtggttttatatcctcttgtgagtccacgtctagaaactcagacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctgaggtgcttagtggttttatatcctcttgtgagtccacgtctagaaactcagacc 500

                                                                       
Query: 301 aaaacaaaaggttgttccttttccacttcccacacttccagttagctgtggtctctgtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaacaaaaggttgttccttttccacttcccacacttccagttagctgtggtctctgtgg 560

                              
Query: 361 tgtgaaacgttccagaaac 379
           |||||||||||||||||||
Sbjct: 561 tgtgaaacgttccagaaac 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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