BAC Information

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BAC

Clone NameMSMg01-392E02
Chromosome13 (Build37)
Map Location 11,414,668 - 11,415,050
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039648
Downstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392E02.T7 (MSMg01no392_e02.b1)MSMg01-392E02.TJ (MSMg01no392_e02.g1)
ACCAG493832AG493833
length746753
length of high quality
(start - end)		461 (54 - 514)381 (74 - 454)
definitionCHROMAT_FILE: MSMg01no392_e02.b1 PHD_FILE: MSMg01no392_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:43 2005CHROMAT_FILE: MSMg01no392_e02.g1 PHD_FILE: MSMg01no392_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATCAGATTCTTTAACCTGCCAGGGAACATTGCAATTCCTGA
GAAAGTTTGTTTTCTAAGCTTTTTAAAAATTATGTTTATTTATGTATTCA
TTTATTTTTATTATTTCATGTATGTTATTATTGTTGTTGTTGTGCACGTG
CACATAGGAAACTCAGAGGACAAATTGTGGAAACTAATTCCCTCCTTCTA
TCATATGGACTCTGGGTTTCAAACTCAGGTAGTTAGACTTGGCAGCAAGT
GCCTTTACCCAGTAAGCCATCTCTCCAGTTCAAGAGAAAGATTGTATACG
TAGTATTTGCTCAAATGTATGTGACTATAATACCTTACAGTAAAACATAT
ATGAAAATGCTATCATAATTGATAGCTCCTTTACAAATACATTCTTTTAA
TCTACTAAATTCCATTAAAAGGTGGATGGAATAAAATGTATGTTGCATTG
TCATAAATAACTAATGTAAGATAATGGACTTATAATAATGATATTTACAG
TCATTCTACCAGCATAATCCCTTGAAAGGATTTCCCACTAGGCCATCTTA
ATAAATGTCAGCCCCTGATATTATTAACATATTTCTATTTTTATTTTATG
CATGTGGCCGCTTTGCCTCCACTCTGTCCGTCCCCCCTGCCCCGCCCGTA
CCACCCCCAATCGTACCTTATATTCCTCCCAACCGGACCCTCCCTC

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCACTAAAACAGTCTGGCATTGGACT
TTTTTGTTTGGGAGGTTTTTTGATAACTCTCTGTATTGTCTTAGGTGTTA
TAGGACTGTTTAGGTAGTTTACCTGACCTTGATTTGACTTTAGTACAGAA
AGCCATCTAGATTTTTTTCAGTTTTGTAGAGCTAAACGCTTTTGTAGTTG
CTTCAGATGATTTTCTTGAATTTTCTCAGATTCTGTTGTTATGTCTCTTT
TTCATTTCTGATTTTGTTATTTTGTATACTGTCTCTGTGACCTTTAGTTA
ATTTGGNTAAGGGTATATCATATCTATCTTGGTGAATTTCTTAACAAACC
AGCTCTTGGTTTGTTGATTTTTTGAATCATTCTCTTAGCTTCTAACCATT
TGATTTCTGCCCTGAGTCTGATTATATTCTCTCATTTACTCCTTTTTGCT
GCACCCTGCTCCCTTGTGTTCTATACACGGTTTGTGTCCTTCCACTCCGC
CCGTCCCGATTTTCCTGTCCCTTCTCTTTCTTAGTCCCTTCGTGTTTTTT
ATCCATGGCTCTCCCGCTTCTCCCCTTGTTCTTCCGCGCACTTCGGTATG
ATTGTTCTTCTCCTCCCTGTTTTTTTCTTCCCCCCGCGGGTTGCTTTTTT
ATCCTTCTTCCCTTTCCCCCTGCCCCCCCCCCTCTCCTCCTTTTTTATCC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_e02.b1 MSMg01no392_e02.b1 CHROMAT_FILE:
MSMg01no392_e02.b1 PHD_FILE: MSMg01no392_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:43 2005
         (461 letters)



>mm_chr13_11414190_11415050
          Length = 861

 Score =  716 bits (370), Expect = 0.0
 Identities = 381/386 (98%), Gaps = 3/386 (0%)
 Strand = Plus / Minus

                                                                       
Query: 76  attatgtttatttatgtattcatttatttttattatttcatgtatgttattattgttgtt 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 attatgtttatttatgtattcatttatttttattatttcatgtatgttattattgttgtt 802

                                                                       
Query: 136 gttgtgcacgtgcacataggaaactcagaggacaaattgtggaaactaattccctccttc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 801 gttgtgcacgtgcacataggaaactcagaggacaaattgtggaaactaattccctc---c 745

                                                                       
Query: 196 tatcatatggactctgggtttcaaactcaggtagttagacttggcagcaagtgcctttac 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatcatatggactctgggtttcaaactcaggtagttagacttggcagcaagtgcctttac 685

                                                                       
Query: 256 ccagtaagccatctctccagttcaagagaaagattgtatacgtagtatttgctcaaatgt 315
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccagtgagccatctctccagttcaagagaaagattgtatacgtagtatttgctcaaatgt 625

                                                                       
Query: 316 atgtgactataataccttacagtaaaacatatatgaaaatgctatcataattgatagctc 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgtgactataataccttacagtaaaacatatatgaaaatgctatcataattgatagctc 565

                                                                       
Query: 376 ctttacaaatacattcttttaatctactaaattccattaaaaggtggatggaataaaatg 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctttacaaatacattcttttaatctactaaattccattaaaaggtggatggaataaaatg 505

                                     
Query: 436 tatgttgcattgtcataaataactaa 461
           ||||||| ||||||||||||||||||
Sbjct: 504 tatgttggattgtcataaataactaa 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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