BAC Information

Click to search

BAC

Clone NameMSMg01-392E11
Chromosome13 (Build37)
Map Location 4,307,675 - 4,307,989
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667411, LOC100039182, 2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12
Downstream geneAkr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392E11.T7 (MSMg01no392_e11.b1)MSMg01-392E11.TJ (MSMg01no392_e11.g1)
ACCAG493850AG493851
length802772
length of high quality
(start - end)
---395 (76 - 470)
definitionCHROMAT_FILE: MSMg01no392_e11.b1 PHD_FILE: MSMg01no392_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:45 2005CHROMAT_FILE: MSMg01no392_e11.g1 PHD_FILE: MSMg01no392_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCTTTCCCCCTTNCCCCCACCCCCCCNGCCCTTCCCNNAGGAGCCT
CCCCCNCNNNNCCCCTCTCAAAAAATTTGGCCGGCCCGCCCTAAATACGC
AAACTCCACCTTTTATTCTCCGAAGAACACAAGAGNAATTCCCCGCCGGC
GNAAAAATNTCCNACCTATTTCTCTTCCTCATAGAAGGAGCAAAAAACCA
AAAGGNTAAAGNTNAAAACCCCTGCNAAAGGGCCAACCACCTAACAGCAA
GCGGNNAAAANAAGGAACAATCTCTCTTAAACCCACTTGGCCCCACCCCA
AACCTCTTTTTTCCCCCCCCAAAAGGGGAAAAAAATTTAATTTTTAAAAA
AAAACAAATTAAATTTGTAAAATTCCCGGGNNTAAAAAAAAAAATTCCCA
CTAAAAACCCTTTGGGTTTTTTTTTTTGGGAAAAAAAATAAATATATAAC
TTTNNCAAAAAAAAGGGAGAAACCACCCCGCGCGAAAAAACACNACCCNA
ANNAAAAATTCTTCTTTACAACAAATAAATGNCCCCAAGTGGCTCCGCTC
TTCCTCGGNNCCCTCCGTTCCCCTCCCCCCNCNCCTCCCCCAAAAANAAT
AATAGTCNNNTCCTCCTCCCCCCCCCCCTCCTCTGTGNANNNNNACCACT
CCCCCCCCTCCCCTCNATAAAAAACAAAAAAAGGNCNCGGGGGGGTGTCN
ATAAAAGNAGAGGAGAACAANACACCCCCCNCCTCTCCATGATATTAAAG
TNNNNNTCAATAAAGAGAAACNANNAAAACACCATCACTGCCNCNCAGGT
GG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTACAGTACAGGGCATCTTTCCTCCT
TGCTTGCAGTAAGGAAAAACACTAGAAAATAGGTGTGTTAGAAGTGACTG
GAAATGTGAAACAGACTAATAGTTAGAAGAGTACTTCTGGCCCTTCCGGT
TCAGCCAGCATCAGGGTAGCTAGGGCACGGAGTCGGCTGACACCCGCCAG
CTAAGCACAAGACCCGCCATGGGATCTTAAGACCTCTGCTGAGTGGAACA
CAGCCTCTGCTCCAATCCAATCTTTTGGAACCTGAGACTGCATTAGTTAG
GGAAGCAGAAAACCCAGCCTGATCAGGGGCACAAGTCCCTTCCGGTCCAG
CCAGCACCGGGGTAGCTAGGGCGCAGAGTCAGCTGACACCCACAAACTAC
CCACGACACGGGATCTTAAGACCTCTGGTGAGTGGAACACAGCTGCTGCT
CCAATCCCATCGCTCGGGGACCTGAGACTGCGTTAATTACCGAAGACGAA
AACCTGGTCTGATCAGGGGCACAAGCCCCTTTTGGTGCCGCTAGCCACCG
GGCACCCACGGTGCCGGATTTCGTTGTAATCCTCCTTTCACCCCCAACAC
CCTTTTCTCGGTGTGGCAACCCATTCTCTCCTTTTTCACCTCCCACTTTG
CGCCCTCCTCTCTCCCTTCCCTTCCTTACCTCCACTACTCCTGTTCCTCC
CCGTCGCCCAGCTTTCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_e11.g1 MSMg01no392_e11.g1 CHROMAT_FILE:
MSMg01no392_e11.g1 PHD_FILE: MSMg01no392_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:45 2005
         (395 letters)



>mm_chr13_4307675_4308469
          Length = 795

 Score =  547 bits (283), Expect = e-160
 Identities = 307/319 (96%), Gaps = 8/319 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagtacagggcatctttcctccttgcttgcagtaaggaaaaacactagaaaataggtg 60
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tacaatacaggacatctttcctccttgcttgcagtaaggaaaaacactagaaaataggtg 256

                                                                       
Query: 61  tgttagaagtgactggaaatgtgaaacagactaatagttagaagagtacttctggccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgttagaagtgactggaaatgtgaaacagactaatagttagaagagtacttctggccctt 196

                                                                       
Query: 121 ccggttcagccagcatcagggtagctagggcacggagtcggctgacacccgccagctaag 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ccggttcagccagcaccagggtagctagggcacggagtcggctgacacccgccagctaag 136

                                                                       
Query: 181 cacaagacccgccatgggatcttaagacctctgctgagtggaacacagcctctgctccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cacaagacccgccatgggatcttaagacctctgctgagtggaacacagcctctgctccaa 76

                                                                       
Query: 241 tccaat----cttttggaacctgagactgcattagttagggaagcagaaaacccagcctg 296
           ||||||    |    ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 75  tccaatcgcgc----ggaacctgagactgcattagttagggaagcagaaaacccggcctg 20

                              
Query: 297 atcaggggcacaagtccct 315
           |||||||||||||||||||
Sbjct: 19  atcaggggcacaagtccct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)