MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-392G04
Chromosome	13 (Build37)
Map Location	11,768,627 - 11,768,912
singlet/doublet	singlet
Overlap gene	Ryr2
Upstream gene	LOC100039648, Zp4
Downstream gene	LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100039648 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039648
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins pseudo : _no_value

name	Zp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664793 MGI:3690088
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Ryr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20191 MGI:99685
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039678 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039678
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Mtr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238505 MGI:894292
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039826 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins

name	Actn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11472 MGI:109192
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG432725 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432725 MGI:3644181
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 743 ESTs, 10 Proteins

name	Heatr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217995 MGI:2442524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC546246 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546246
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 134 ESTs, 8 Proteins pseudo : _no_value

name	Lgals8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56048 MGI:1928481
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039900 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039900
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Edaradd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171211 MGI:1931001
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ero1lb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67475 MGI:1914725
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC664862 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 177 ESTs, 5 Proteins pseudo : _no_value

name	EG238507 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238507 MGI:3643040
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 9 Proteins

name	Zp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263870 GeneID:664793 MGI:3690088
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : zona pellucida glycoprotein 4 transcript_id : XM_001481274.1

name	Ryr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430577 GeneID:20191 MGI:99685
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ryanodine receptor 2, cardiac transcript_id : NM_023868.2

name	Mtr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487478 GeneID:238505 MGI:894292
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5-methyltetrahydrofolate-homocysteine methyltransferase transcript_id : NM_001081128.1

name	LOC100039826 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263884 GeneID:100039826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins product : similar to DAZ associated protein 2 transcript_id : XM_001473616.1

name	Actn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:59709448 GeneID:11472 MGI:109192
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actinin alpha 2 transcript_id : NM_033268.3

name	EG432725 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263888 GeneID:432725 MGI:3644181
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 741 ESTs, 10 Proteins product : predicted gene, EG432725, transcript variant 1 transcript_id : XM_484215.5

name	Heatr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130041 GeneID:217995 MGI:2442524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : HEAT repeat containing 1 transcript_id : NM_144835.4

name	Lgals8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803486 GeneID:56048 MGI:1928481
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lectin, galactose binding, soluble 8 transcript_id : NM_018886.3

name	LOC100039900 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263890 GeneID:100039900
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100039900 transcript_id : XM_001473864.1

name	Edaradd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:127139912 GeneID:171211 MGI:1931001
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EDAR (ectodysplasin-A receptor)-associated death domain transcript_id : NM_133643.3

name	Ero1lb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348229 GeneID:67475 MGI:1914725
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ERO1-like beta (S. cerevisiae) transcript_id : NM_026184.2

name	EG238507 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263872 GeneID:238507 MGI:3643040
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 9 Proteins product : predicted gene, EG238507 transcript_id : XM_138433.5

name	Zp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263871 GeneID:664793 MGI:3690088
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : zona pellucida glycoprotein 4 protein_id : XP_001481324.1 transl_except : (pos:11614445..11614447,aa:OTHER) transl_except : (pos:11614478..11614480,aa:OTHER) transl_except : (pos:11615001..11615003,aa:OTHER) transl_except : (pos:11615025..11615027,aa:OTHER) transl_except : (pos:11615987..11615989,aa:OTHER) transl_except : (pos:11618261..11618263,aa:OTHER) transl_except : (pos:11618802..11618804,aa:OTHER) transl_except : (pos:11620619..11620621,aa:OTHER) transl_except : (pos:11620640..11620642,aa:OTHER) transl_except : (pos:11620673..11620675,aa:OTHER) transl_except : (pos:11620682..11620684,aa:OTHER) transl_except : (pos:11620697..11620699,aa:OTHER)

name	Ryr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430578 GeneID:20191 MGI:99685
definition	GO_component : GO:0016021 - integral to membrane [Evidence IC]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005219 - ryanodine-sensitive calcium-release channel activity [Evidence IDA] GO_process : GO:0006874 - calcium ion homeostasis [Evidence IEA]; GO:0006816 - calcium ion transport [Evidence IDA]; GO:0006811 - ion transport [Evidence IEA]; GO:0031000 - response to caffeine [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ryanodine receptor type 2; calcium release channel product : ryanodine receptor 2, cardiac protein_id : NP_076357.2

name	Mtr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487479 GeneID:238505 MGI:894292
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0031419 - cobalamin binding [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0004156 - dihydropteroate synthase activity [Evidence IEA]; GO:0008898 - homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008705 - methionine synthase activity [Evidence IMP] [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0009396 - folic acid and derivative biosynthesis [Evidence IEA]; GO:0009086 - methionine biosynthesis [Evidence IMP] [Evidence IEA] codon_start : 1 note : Methionine synthase product : 5-methyltetrahydrofolate-homocysteine methyltransferase protein_id : NP_001074597.1

name	LOC100039826 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263885 GeneID:100039826
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473666.1

name	Actn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:59709449 CCDS:CCDS26239.1 GeneID:11472 MGI:109192
definition	GO_component : GO:0005865 - striated muscle thin filament [Evidence TAS]; GO:0030018 - Z disc [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0051015 - actin filament binding [Evidence IDA] [Evidence TAS]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0030374 - ligand-dependent nuclear receptor transcription coactivator activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030674 - protein binding, bridging [Evidence TAS]; GO:0042803 - protein homodimerization activity [Evidence TAS] [Evidence IDA]; GO:0030375 - thyroid hormone receptor coactivator activity [Evidence IDA]; GO:0051370 - ZASP binding [Evidence IDA] GO_process : GO:0006936 - muscle contraction [Evidence IPI] codon_start : 1 exception : mismatches in translation product : actinin alpha 2 protein_id : NP_150371.3

name	EG432725 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51767531 GeneID:432725 MGI:3644181
definition	codon_start : 1 product : similar to hCG1782414 isoform 1 protein_id : XP_484215.1

name	Heatr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46519149 CCDS:CCDS26240.1 GeneID:217995 MGI:2442524
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : BAP28 protein protein_id : NP_659084.3

name	Lgals8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9256551 GeneID:56048 MGI:1928481
definition	GO_function : GO:0005529 - sugar binding [Evidence IEA] codon_start : 1 note : lectin, galactose binding, soluble 5 product : galectin 8 protein_id : NP_061374.1

name	LOC100039900 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263891 GeneID:100039900
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473914.1

name	Edaradd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:127139913 GeneID:171211 MGI:1931001
definition	GO_component : GO:0005737 - cytoplasm [Evidence NAS] GO_function : GO:0005123 - death receptor binding [Evidence NAS]; GO:0005515 - protein binding [Evidence IEA] [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007249 - I-kappaB kinase/NF-kappaB cascade [Evidence NAS]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; crinkled product : EDAR (ectodysplasin-A receptor)-associated death domain isoform 1 protein_id : NP_598398.3

name	Ero1lb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348230 GeneID:67475 MGI:1914725
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : endoplasmic oxidoreductase 1 beta protein_id : NP_080460.2

name	EG238507 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263873 GeneID:238507 MGI:3643040
definition	codon_start : 1 product : similar to M2 ribonucleotide reductase protein_id : XP_138433.5

name	LOC100039648 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039648
definition	number : 1 pseudo : _no_value

name	LOC100039648 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039648
definition	number : 2 pseudo : _no_value

name	LOC100039678 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039678
definition	number : 4 pseudo : _no_value

name	LOC100039678 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039678
definition	number : 3 pseudo : _no_value

name	LOC100039678 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039678
definition	number : 2 pseudo : _no_value

name	LOC100039678 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039678
definition	number : 1 pseudo : _no_value

name	LOC546246 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263889 GeneID:546246
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 134 ESTs, 8 Proteins product : similar to ubiquitin/40S ribosomal protein S27a fusion protein pseudo : _no_value transcript_id : XR_031414.1

name	LOC664862 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:94394696 GeneID:664862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 177 ESTs, 5 Proteins product : similar to Gpr137b protein pseudo : _no_value transcript_id : XR_001658.1

clone name	MSMg01-051G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481H01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-260B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393H19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-447B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132H04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-139L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532D09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-332M22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-058H15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-547P15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-119A10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-512I24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-068O02
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-283F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338F09
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-392G04.T7 (MSMg01no392_g04.b1)	MSMg01-392G04.TJ (MSMg01no392_g04.g1)
ACC	AG493932	AG493933
length	770	750
length of high quality (start - end)	542 (46 - 587)	291 (74 - 364)
definition	CHROMAT_FILE: MSMg01no392_g04.b1 PHD_FILE: MSMg01no392_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:53 2005	CHROMAT_FILE: MSMg01no392_g04.g1 PHD_FILE: MSMg01no392_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:53 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCAGCTATTGACAAGAATGAATTTATGAAATTCCTAGGCAAATGGTT GGACCTGAAGGGCATTATCCTGAGTGAGGTAACCCAATCACAAAAGAACT CAAAAGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAA TACCCAAGATATAAGTTACAATTTGCAAAACACATGAAACTCGAGAAGAA CGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAACTGGGAACAAAA CACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGA CGGACCATCTAGAGACTGCCATATTCAGGGATCCATCCCATAATCAGCCT CCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACC CTGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGA AGTAGATGCTCACAGCCAGCTATTGCATGGATCACAGGGCCCCCAATGGA GGAGCTAGTGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGG TAGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCT GCATATGTATCAAAAGATGGCCCAGCGGGCCATCACTGGAAAGAGAAGCC CACTGAACTTGCCAACTTTATATGCCCCACCACCAGGGAACGCCTCGGCC CACAAGTGGGAGTGGATGGG	CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXAACTCTTTCCATGTGGTTTTCCTGTAG TTCCGTTCTCTGTGACATTTATAGAGATGGCTTCTGTATTAATGAGCTTT GCTTCCTATTTTATTTTTTGTTTCTTTACTTATAATATGTGCTTTTTTAA CCATGTTGTTAAGATACGCAGAAATCCTTTCTTTACCATCTTACTCCACA TCTTGCTCAGAGAATCGACCCTTTCTGCGTGACATCATGTTTGCTTTTTT TTTCTTTTCTTTTTTTTTTTTTTTTTTTGGCTCATACATCAGCTGTTTTG CTTTTCTTTCTTTCCTTTCTTCTTCCTCTTCGCATCTTGGTTAATTTATT TTTAACTTCCCCCTGTCTTTTTTCTACCTCCCCTACCCCTCCCCTTTTCC TCCTTTCGCTTTTCCTTTGTCCTTACCTTGCTCTGCCCACTTGCAGCTCC TGGCTCCGTTATTATCCCCTTGTTCCGTCCGCACACCTCTCTCCTATTTT CCACTCCCCCTCTTCTTTCTCTCCTTCTTTTTTCTTTCCCCTCTTTTGCC TCTTTCCCCCTTTTTTCTTTAAATTCTCCTCCGCCTTTTCCTCTTTTTCC TCCCCTTTTTTCTTCTCTCCCCCCCCCACTTCTCCTTCCTTCTCCCCCTC TCCCTTTCCCCCCCCTCCTCCCCCCTTTCTCCTCCTTTTGTTTTCCTTTT
quality values	Open. Hide. 8 8 8 8 8 8 18 22 23 33 39 18 18 15 12 10 10 12 22 22 22 22 23 23 28 22 16 10 9 10 8 16 12 11 11 11 15 19 32 34 24 24 19 22 22 24 34 39 39 29 32 35 29 29 28 28 28 29 37 30 34 22 15 10 10 10 17 19 30 33 33 33 33 33 33 36 35 50 42 42 36 36 42 39 39 47 48 48 47 43 48 48 43 43 43 43 43 43 43 48 48 43 57 48 48 47 57 48 54 54 54 54 54 57 57 57 57 57 57 57 57 57 57 57 47 54 57 57 48 48 42 44 42 44 44 44 57 47 54 54 54 54 57 57 59 68 68 57 57 57 50 47 47 47 50 48 46 46 46 48 50 50 57 50 50 36 36 37 50 50 57 57 57 57 57 57 52 52 52 57 57 57 57 57 52 52 52 52 52 57 57 57 57 57 57 57 52 52 52 57 57 57 57 57 52 52 57 57 57 57 57 57 57 52 52 52 57 57 52 52 52 57 57 57 57 52 52 57 57 57 57 57 57 57 52 57 52 62 62 62 52 52 52 52 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 43 43 43 26 26 26 35 35 43 35 43 43 62 62 62 62 62 62 62 62 62 62 62 62 52 43 43 39 39 62 62 62 62 62 62 62 62 62 62 62 62 57 52 43 43 44 44 57 57 57 57 57 57 57 52 52 57 57 57 57 52 52 52 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 52 52 57 57 57 57 37 43 57 57 57 57 57 57 57 57 57 57 57 52 52 54 59 59 57 57 59 59 59 57 57 57 52 52 52 57 59 59 59 59 68 59 59 59 59 59 59 48 47 47 47 57 47 57 47 47 48 48 48 57 57 59 57 57 57 59 57 48 48 48 48 57 57 59 48 48 48 57 57 57 59 57 57 48 48 47 48 48 59 59 47 41 41 26 36 34 42 42 43 43 43 43 43 47 59 59 59 59 48 48 34 40 34 33 33 25 25 25 36 36 41 41 41 43 59 48 50 43 41 34 28 28 28 32 32 39 43 35 35 35 39 37 43 47 43 37 34 34 23 23 20 27 18 19 20 28 28 39 40 46 47 47 43 43 46 46 46 39 37 34 28 25 25 20 20 23 32 34 39 39 39 32 32 30 37 35 20 22 23 23 25 20 30 14 14 14 15 21 24 22 19 19 19 14 19 35 37 37 23 26 11 11 11 11 12 12 21 28 30 30 25 24 27 29 16 15 14 12 11 15 24 19 19 13 25 18 13 12 13 12 15 12 19 19 32 31 36 43 35 28 28 28 28 32 28 33 19 22 17 25 29 28 20 20 16 14 14 14 13 28 23 18 13 14 12 9 9 9 9 10 8 8 8 8 8 8 8 8 8 11 11 15 12 15 15 15 10 10 10 8 8 8 8 8 8 10 10 10 10 9 9 9 9 10 15 28 19 15 11 10 10 13 22 16 19 14 13 10 13 16 13 16 9 7 7 8 8 8 8 8 8 8 8 8 8 10 8 8 6 6 6 6 8 9 9 11 11 15 15 12 9 8 8 8 8 8 12 12 11 11 9 8 8 8 8	Open. Hide. 8 8 8 8 10 9 9 9 23 19 23 13 8 8 8 14 14 37 39 39 41 42 41 39 39 41 39 18 25 11 7 7 7 7 8 7 8 8 10 13 17 22 19 21 37 37 33 36 36 36 33 33 50 50 42 28 25 16 9 9 9 12 12 12 13 15 15 13 14 24 24 30 28 30 29 36 57 57 57 57 38 42 50 50 50 47 59 59 59 59 59 59 59 68 59 59 59 59 59 68 68 59 59 59 54 54 59 59 68 68 68 68 48 48 42 41 41 46 57 57 57 46 43 57 42 50 50 50 50 50 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 59 59 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 50 57 44 44 35 35 35 43 43 52 57 57 59 59 59 59 59 57 59 57 68 57 57 57 57 57 57 52 57 57 57 59 59 54 54 54 57 57 57 57 52 52 52 52 59 59 54 54 57 57 57 57 59 57 59 59 57 57 57 57 57 57 57 57 59 59 68 68 68 57 57 47 47 47 57 57 68 68 68 57 44 32 22 13 15 10 10 10 10 21 21 43 48 44 57 57 48 48 57 57 57 57 57 57 57 68 68 68 68 59 59 59 59 59 57 57 57 57 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 48 46 46 46 41 41 43 47 43 19 11 9 9 9 9 41 41 44 43 47 41 46 46 47 48 48 48 59 34 34 23 23 23 37 34 37 43 39 32 28 20 20 19 24 12 12 13 30 34 59 59 41 32 20 20 20 23 22 10 10 10 14 24 20 20 20 28 21 21 13 13 12 12 12 13 13 12 12 12 12 19 24 30 18 19 23 20 20 28 34 39 39 40 43 37 39 39 32 25 16 11 11 18 24 33 34 34 12 12 12 12 12 18 28 40 47 32 32 20 20 20 31 31 43 43 48 48 43 43 39 43 35 35 35 32 32 19 19 19 19 27 26 18 10 9 9 15 19 20 20 16 16 10 10 10 22 12 13 9 13 15 24 13 10 10 9 9 11 10 11 11 11 11 10 10 10 7 7 7 9 9 12 11 14 19 14 10 8 8 8 8 10 11 17 11 11 8 8 8 8 10 9 7 10 8 10 10 10 10 10 19 12 17 20 20 19 15 10 8 8 9 9 8 8 7 7 7 9 10 14 8 8 8 8 8 7 6 8 8 8 8 8 17 17 8 8 8 8 10 10 12 12 11 10 9 10 11 13 10 10 9 8 8 8 8 8 8 8 22 8 8 8 9 9 8 11 9 10 12 12 10 10 13 10 11 15 16 20 13 8 8 8 8 8 10 8 8 8 8 12 15 13 14 24 17 21 19 22 15 15 9 9 9 17 14 10 8 8 8 8 8 8 8 8 9 10 10 10 10 9 9 9 9 11 9 8 8 13 13 9 12 10 8 11 11 13 11 11 14 13 15 14 12 10 9 10 10 8 12 8 12 12 13 13 18 19 20 22 21 14 12 11 11 11 17 19 22 17 12 9 9 7 8 10 10 10 10 10 9 11 10 8 8 8 8 8 8 8 8 10 17 14 26 25 27 25 25 15 13 8 8 8 9 10 10 15 23 19 14 14 14 20 21 21 15 15 12 12 11 16 21 17 16 9 9 9 15 10 10 10 6 6 6 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no392_g04.g1 MSMg01no392_g04.g1 CHROMAT_FILE:
MSMg01no392_g04.g1 PHD_FILE: MSMg01no392_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:53 2005
         (291 letters)



>mm_chr13_11768492_11769182
          Length = 691

 Score =  493 bits (255), Expect = e-144
 Identities = 280/291 (96%), Gaps = 5/291 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactctttccatgtggttttcctgtagttccgttctctgtgacatttatagagatggctt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 421 aactctttccatgtggttttcctgtagttccattctctgtgacatttgtagagatggctt 362

                                                                       
Query: 61  ctgtattaatgagctttgcttcctattttattttttgtttctttacttataatatgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgtattaatgagctttgcttcctattttattttttgtttctttacttataatatgtgct 302

                                                                       
Query: 121 tttttaaccatgttgttaagatacgcagaaatcctttctttaccatcttactccacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 301 tttttaaccatgttgttaagatacgcagaaatcctttctttaccatcttactccacatcc 242

                                                                       
Query: 181 tgctcagagaatcgaccctttctgcgtgacatcatgtttgctttttttttcttttctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 241 tgctcagagaatcgaccctttctgcgtgacatcatgtttgctttttttttcttttc---- 186

                                                              
Query: 241 tttttttttttttttggctcatacatcagctgttttgcttttctttctttc 291
            ||||||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct: 185 -tttttttttttttcggctcatagatcagctgttttgtttttctttctttc 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information