BAC Information

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BAC

Clone NameMSMg01-392I05
Chromosome13 (Build37)
Map Location 116,185,989 - 116,186,285
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392I05.T7 (MSMg01no392_i05.b1)MSMg01-392I05.TJ (MSMg01no392_i05.g1)
ACCAG494030AG494031
length758750
length of high quality
(start - end)
466 (73 - 538)306 (74 - 379)
definitionCHROMAT_FILE: MSMg01no392_i05.b1 PHD_FILE: MSMg01no392_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:03 2005CHROMAT_FILE: MSMg01no392_i05.g1 PHD_FILE: MSMg01no392_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATATATCACGGCAGACATAGGTACGATGCCCAGCCTATAAA
CTTTAGCACAAGATAGTCAAGAAGACAAAAAGACAGGTTACTGGGCGAGA
GAAGAAAAGAGAGGGGGGAAGAGAGGAGGAAAGAAAGAAAGAGAATAGAA
AATTATGTTATCAATAAAATAAATTTATTTATCAAATAAATTGGTTTATG
CCTGAAAGAACAAGTTAGACATAACCTTTCTGGAATAAGCAATTTGTTTG
CAAGGCAGTTATTTATTTAGCTTAACATGAAATGATAGAAGCTTATAATG
TCTAGGTTAAGAGTTTGGACCTAGAAACTATACCTATGAAGTTCATAACA
AAAAGTGAAGAGTCATTCTCTGAGCAATTGGCCTTTTTGAGGAAAGAAAA
GAACTGGAATTTGCTTCCTAAGTTTTTTCTTGCAATTTGCTTCTTAATTT
TTTTCTTTTGGAAGGGCATAAAATTTAAGAAGTTACCACACAATCAGATA
GTTTTTTTTAATTAATTTTTTTAAATTACGTATTTAGCTCATTTACCTTT
CCCATGCTATACCCAAAGGCCTCCCCTACCCTCCACCCCCTATCCCCTAC
GCGGCCCTCCCCCCCTTTCCGCCCTGTGCCCCCCTGTTCCGGCCCGCCCC
CCCTCCTTGCCTCCTGTGGGCCCTCCCCCCCCCCCCCGTCCCTTCCCCCC
CCTCTCCC
CTGAAGTGGGAGGCCTGGNGGNCGCCCGGTTTTCAAACAGGGGTGAACTA
TAGAAGGATCCCAGCAACCCCGTGAAAATGAAGATACATCTTTTCCAATG
AAAGCAGCACTAAGAGGAAAATTCATAGCAGTAAGTACCTTCATAAAGAA
ATTGGAGAAATTTCATACGAGCAACTTAACAGCACACCTGAAACCTTTAG
AACAGAAAGAAGCAAACACACCAAAGAGGAGTAGAAGGCAGGAAATTGTC
ATACTCAAGCTGTTAGAAAAAACAGAACAATACAAAGAATCAACAAATAC
AACAGCTTTTTTTTTTTTTTTTGAGAAAATCCAGAAGATAGATAAACTCT
TAGCCAACCTAACTAAAGGGTACAGAAACAGGATCCAAATTAGGAAAATC
AAAAAGAAAAAGGGAGGCATAACAAGAGAACCTGAATAAGTTCAAAAAAT
TATCAGAACCTAGCAAAAGCCTATACTCTGCAAAACTTGAAAATCTAGAT
GAAATGGATGCTTTTCTAGACACCAAACACCTACCCAAGCTAAATCCCGA
ACAGATAGACTGGCTAACCCGCACCATAACCCCGAAGGAAATAGAATTAG
CCCCCCAAAACCCCCCCATCCAAGAAACCCCCGGGCCAGAAGGGTTTAGC
GAATTATTCCTCCCAACCTTTTCCAACACACCCAATAAAAAATTCCCTCC
CCCTATCCCTTTCCCCCCCCCCCCACGCAACCCCCCCTATTTTCTCTCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_i05.b1 MSMg01no392_i05.b1 CHROMAT_FILE:
MSMg01no392_i05.b1 PHD_FILE: MSMg01no392_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:03 2005
         (466 letters)



>mm_chr13_116185802_116186667
          Length = 866

 Score =  441 bits (228), Expect = e-128
 Identities = 274/298 (91%), Gaps = 15/298 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacataggtacgatgcccagcctataaactttagcacaagatagtcaagaagacaaaaag 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gacataggtaggatgcccagcctataaactttagcacaagatagtcaagaagacaaaaag 247

                                                                       
Query: 61  acaggttactgggcgagagaagaaaagagagggggg--------------aagagaggag 106
           ||||||||||||| ||||||||||||||||||||||              |||||||| |
Sbjct: 248 acaggttactggg-gagagaagaaaagagaggggggggggaagaggtagaaagagagggg 306

                                                                       
Query: 107 gaaagaaagaaagagaatagaaaattatgttatcaataaaataaatttatttatcaaata 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaaagaaagaaagagaatagaaaattatgttatcaataaaataaatttatttatcaaata 366

                                                                       
Query: 167 aattggtttatgcctgaaagaacaagttagacataacctttctggaataagcaatttgtt 226
           ||||| ||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 367 aattgctttatgcttgaaagaacaagtgagacataatctttctggaataagcaatttgtt 426

                                                                     
Query: 227 tgcaaggcagttatttatttagcttaacatgaaatgatagaagcttataatgtctagg 284
           |||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||
Sbjct: 427 tgcaaggcagttatttatttagctaaacatgaaataatagaagcttataatgcctagg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)