BAC Information

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BAC

Clone NameMSMg01-392M06
Chromosome13 (Build37)
Map Location 118,586,074 - 118,586,319
singlet/doubletsinglet
Overlap geneHcn1
Upstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneLOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392M06.T7 (MSMg01no392_m06.b1)MSMg01-392M06.TJ (MSMg01no392_m06.g1)
ACCAG494223AG494224
length766758
length of high quality
(start - end)
342 (74 - 415)247 (71 - 317)
definitionCHROMAT_FILE: MSMg01no392_m06.b1 PHD_FILE: MSMg01no392_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:24 2005CHROMAT_FILE: MSMg01no392_m06.g1 PHD_FILE: MSMg01no392_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGCACAGGATCC
GCGGAATTCACAACTTACCAATCTTGATTGGCCAAGAAATACTTAAGGAA
TGTTTAAAGTCCTTAGTCATCAGGGAAATGTATGTGCTTTTAGGACTGAC
CATTTAGTAGTCAAGTAGAGGTAGCCTAATTAGAGGGCTTATCTCTCAGG
AAGAATAATTATCCAACTCTCTATAATCACTAATTTCTTGTAGCTATTCA
TTTAGGGATGAATCCTCATTAGATATCTTCCATTCAAATTTGCTTGTGAA
CTGCTGTCATTTCTAATGTCTTGTTTAGGCTACCACAGTGTAAAGATCTC
TTATGTGCAGGTTTCCTGTCAAATACGAAGTACAGCAATGAACATTATGG
TGCGATATAATTTGGCACCCCCCAACAGCAATATAATTGAGTTTAAGACC
CATTCAATCAGAACAAATTCATGTCTAGTATTGTAAACCTGGCTAACTAG
CCATGACTGGGGAGGCCACATAATCTAGAGCATTCCTAAATTCCTAAGCC
ATTGTAATCTAGCTGCATCCTAGATACTGTTTCTAATGCCCATAGGTCAG
TCTCACCCCTCCTCCAAAAAGTTTTCTTTACCATTAATTTTCTCTGGAGA
TTCTTACTGATGGGCCCCCACCACCAAGGCCCCTGGACTCCTCCTCCCCC
GCTGAAACCTTCTATACACTACCCCTACACCTAACACTTCCGAAACGCCC
TCGCACACCCCCCCAG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTTAGGAGATATGCCATGTAGTGAAAGCA
GGCCTTGATCAACTGTCCTATATAAGTTGTGAGGACCTAAGTTTGCTTTA
AGAGTTGAGCATCTATAAAGGAAGGCTCAGAGATTATGATATAGTGGTGG
CACAAAGTTCAAGTGAACAAGCCCGTACTGTAAGGCTAAGCAATCTGAGT
TTTATGAAGGGGTTTGGATCTCTAGTGAATATTTGAAAAGAAATTCTATG
CTATCATGTTTGAGTCNNATAANTATAATGCATAATTTTAAATACACAAT
ATACTTTATATAATAATAAAACTCAATCTGGGTGAATTGCTTATATTGAT
AAAATACTGACGCGCACATATTAACATGATATAAAACAGTGATTTAATTA
ACATATCATTTTATTAATATGAACATCTTGATGACCTGGTTACTAACTAT
TCTCAAAGCAAAATCAGCCGATCTACAGATTATTGCAACCATTCCACGTT
ACACAATATCCTTCACCATGGTTTATTCTTACCCTACTCTTTGTTTACCC
CTCTTCTTCCCCCCCGAACTATTTTCCCAAGAACGTGCCCCTACTAAAAC
TTCTTTTTTCTTCCCGCCCTACATACCTCCCCCCCCCACTTCTCCTTTAT
TGGCCCAAATTCCATTTCTCCCACCCCCCCCCTCTTCGGCCCCTTGTTTT
TTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_m06.g1 MSMg01no392_m06.g1 CHROMAT_FILE:
MSMg01no392_m06.g1 PHD_FILE: MSMg01no392_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:24 2005
         (247 letters)



>mm_chr13_118585874_118586520
          Length = 647

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaggagatatgccatgtagtgaaagcaggccttgatcaactgtcctatataagttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttaggagatatgccatgtagtgaaagcaggccttgatcaactgtcctatataagttgt 260

                                                                       
Query: 61  gaggacctaagtttgctttaagagttgagcatctataaaggaaggctcagagattatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggacctaagtttgctttaagagttgagcatctataaaggaaggctcagagattatgat 320

                                                                       
Query: 121 atagtggtggcacaaagttcaagtgaacaagcccgtactgtaaggctaagcaatctgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 atagtggtggcacaaagttcaagtgaacaagcccgtactgtaaggctaagcaatctgagc 380

                                                                       
Query: 181 tttatgaaggggtttggatctctagtgaatatttgaaaagaaattctatgctatcatgtt 240
           || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ttcatgaaggggtttggatctctagtgaatatttgaaaagaaatcctatgctatcatgtt 440

                 
Query: 241 tgagtc 246
           ||||||
Sbjct: 441 tgagtc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)