BAC Information

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BAC

Clone NameMSMg01-392M12
Chromosome13 (Build37)
Map Location 116,971,854 - 116,972,096
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041023, LOC547402, LOC100041045, EG623174
Downstream geneIsl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392M12.T7 (MSMg01no392_m12.b1)MSMg01-392M12.TJ (MSMg01no392_m12.g1)
ACCAG494235AG494236
length764773
length of high quality
(start - end)
243 (79 - 321)155 (67 - 221)
definitionCHROMAT_FILE: MSMg01no392_m12.b1 PHD_FILE: MSMg01no392_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:26 2005CHROMAT_FILE: MSMg01no392_m12.g1 PHD_FILE: MSMg01no392_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAAACAGGAT
CCGCGGAATTCTATTTTTCTTTTCTCTAAAATTTTCATGACTTCATTTGT
CTTTGTGGCCAAAGTGTCATAGGTCGATTCTATTTCCTTGCTGCTATGAA
ACAAACAGTGATAAGCACAGATATAGAATCTTTTGGATACATGTTCAGGA
GTGGTACACATAGGGAAGTTTTATATTTAAGAAGGGAGTTTAGGATTTTA
AGAATCCTCCACACTTGTTTCTATAGAAGTTTCTGTGATTTATGGTTCCA
TCGTCAGTGCACCTTTCATTTTNCTGNCTCATTTTGGCATTCCTGGTTTT
AAATTAAAGTCTATGAACCAGATTGAATTGAACAAACACTGTACAGGGCG
AGAAATAAGTGTCTTGCCTCACTCTTAAGCCGATGGACATACAGTTTTGG
AAAATGCTTTTAATTTGCTTCCATGCCCTTGCTTTCATTATTATGCTGCT
TTCTCTGGCGACCTCGACATACGTGCGCTCCTTGTGGCACCCGAATCATT
CCTGAACCTGCCCTTGGCCTGCTAACTGTGCCCACCCCCTACTTGACCCC
CTTATCTGGCTCCTCCTCCCGACCACTCCTCCTCCCGCCCCTTCCTGCGC
TCTTTTTCTTTCTCCCCCCCCAGCACCCGCCCTCACCCTTCTACCCCCTT
CCCCCTTTTTGTCCCCCCCCCCACCCCCTCACTTTCTTTTTTCTCCCCCC
CTTCTCGCCTTTTT
TGCTAGGGGAGCCTGGGGNCGNCTGGCCTAGTCATGAGGGAANTAAGAAG
GATCCCGTACTTACCCCCACTTTCACCAATGGACAGATCGTGGAAACAGA
AACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGAC
CTGACAGATGATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCT
TCTTCTCAGCACCTCACGGGANCCGTTCTCCCNNNNNNNNNNNNNNNNNN
NNCNNNNNNNCNNNNNNCCCCCCCCCCCCCCCCCCNGCGGGCGCGGGGGC
CCGCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCGNCCCCCCCCCCCC
CCCCCCGGCCGCCCCCGCCCGGGCNGCCCCGCCCCCCCCCCCCCCGCCCC
CCCGCGGCGCCCCCGCCCCCCCGGCCCCCCCCCGCCCCCCTTCCCCCCCC
CCTCCTTTCTCCTTCTCCCCTTTCTCCCCTTTTCTCCTTTTTTCCCTTTT
TCCTCTGCCTCCTCGTTCCCCTCCCTCCCCCCCTCTTCTCCCCCCCCTCC
TTTTCCCCCCTCTTTCTCCCTCTTCCCCTTCCTCCTCCCCTCCCCTTTTC
CTCTATGCACTTTTCCATTCACCTTTCCACTCCCCCCCCTTTCTTTCCCC
CCCTCCTCCCCCACCCTTTCTTCTCCTCTTTCCCCTCCACTCTTCGCCCC
CTCCGTCTCTCTCTTCCCGATTCTTTACCCGCTCTTCCTCCTATTCTTCC
NCCTTCCCCTCCTATCCACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_m12.b1 MSMg01no392_m12.b1 CHROMAT_FILE:
MSMg01no392_m12.b1 PHD_FILE: MSMg01no392_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:26 2005
         (243 letters)



>mm_chr13_116971797_116972439
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattttcatgacttcatttgtctttgtggccaaagtgtcataggtcgattctatttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aaattttcatgacttcatttgtctttgtggccaaagtgtcataggtcgattctatttcct 241

                                                                       
Query: 61  tgctgctatgaaacaaacagtgataagcacagatatagaatcttttggatacatgttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgctgctatgaaacaaacagtgataagcacagatatagaatcttttggatacatgttcag 181

                                                                       
Query: 121 gagtggtacacatagggaagttttatatttaagaagggagtttaggattttaagaatcct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 180 gagtggtacacatagggaagttttatatttaagaagggagtttaggattttaagaagcct 121

                                                                       
Query: 181 ccacacttgtttctatagaagtttctgtgatttatggttccatcgtcagtgcacctttca 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 120 ccacacttgtttctatagaagtttctgtgatttatggttccatcctcagtgcaccttcca 61

              
Query: 241 ttt 243
           |||
Sbjct: 60  ttt 58


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)