BAC Information

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BAC

Clone NameMSMg01-393J21
Chromosome13 (Build37)
Map Location 87,165,118 - 87,165,575
singlet/doubletsinglet
Overlap genenone
Upstream geneCox7c, LOC100042887, LOC100042893
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393J21.T7 (MSMg01no393_j21.b1)MSMg01-393J21.TJ (MSMg01no393_j21.g1)
ACCAG494870AG494871
length763763
length of high quality
(start - end)		462 (41 - 502)370 (70 - 439)
definitionCHROMAT_FILE: MSMg01no393_j21.b1 PHD_FILE: MSMg01no393_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:37 2005CHROMAT_FILE: MSMg01no393_j21.g1 PHD_FILE: MSMg01no393_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCTCACTTCTCGGCAAATGACAGTTGAATCAGGCTAGGTAACAAATTGA
TTAGGGTATGTACACATGTGCTGCACAGTGGCCTCTGTCCACATCATTTT
ACAGGATATAAAAACATGACTTAACATTTTAAATAATCATTACATTAGGG
TTGGAGCAAATATTCTAGTGAAGCACTACAACCACGGTGGAATCTGAAGC
ACACTGAATTTTATATGTACTTAAATGCTTATTACCTGCAATCTATTAAT
GCATGCTATCATTAAGGTAATTCATACTCATTTCAAATCCCTTGACTCTA
GAATCTACATTAAAAGTACTCAGAATCACTACCATTGATTTGTGGGATGC
TGTATTGTAGGGATTTAATTAAACAAATGATAGACCTCTCTGATAATTAA
TGGAAATAAACATTCTATATCCAAGAGGAATATAGACTATTAACTATGTG
GTGATTTGACATGCTTGGTCCACAGGAAGTGGAGCTATTAGGATGTGTGC
CTTTATTANAAGAGGTTAGCCTTTGTTAGAAGAAAGTTTTCACTATGGAG
GAGTGACTCTGGGGCCCCACATTTAAGGTCAATTTATGGTCAGAAGAACC
CGGAAATTCCTTTTAAGGGCCGGGGAAGGGAGCCTTCCCCTGGGGGGTTT
TAAACAAAAGGAAAAAACTCTTTTCCCCCCCCCACCAATTTTGCCCGGAA
AAAAAATAGCTTC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATAG
GGTTATTTGATTTTTCTGGAATCCATCTTCTTGATTTCCTTATATATATT
GGATATTAGTCCCCTTTCAGATTTAAGATTGGTAAAGACCCTTTGCCAAT
CTTTTGGTGGACTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAG
CTTTGCAAATTTATGAGGTCCCATTTGTTGATTATTGTTGTTTGATAATA
TCCTGAGGTCTACTCCTCTTGTATGAATTTGCTTCCTTTTGTTCTAGAGC
ATTTAGGTGTGCTGTCATGCTGCTAGTGTGTGCTCTCTTTAGTTTCTTTG
TGGCTGCACTCAGAGCTATGAGTTTTCCTCTTAGGAATGCTTTCATTGTG
TTCCATGAGTTTTGGGATGTTGTGGCTTCCTTTTCACTAATCTCTAAAAG
GCCCTAATAACTTTGTTTCTTCCTTGACCAAAATATCTTTGAAGAAAGAA
TTGGTCCCCTTTCTGGGGAGGGGGGGTTTCTATAATTTAGGGCTTATGGA
AAATCTCCCTTTTTCTGGGGGGGTTGTTATGGGGCTAAAAAAATTTCTCC
ATTTGGTCTCTTTCCGGCCCCGTTCTGGCCAAAAAAAAGGTCCGCTTGGT
AAAACCCCCTTCTCACTCGGGTGTTTAATACGAAATTCTCTTTTTCTTTT
TATTTTCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_j21.b1 MSMg01no393_j21.b1 CHROMAT_FILE:
MSMg01no393_j21.b1 PHD_FILE: MSMg01no393_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:37 2005
         (462 letters)



>mm_chr13_87164914_87165775
          Length = 862

 Score =  847 bits (438), Expect = 0.0
 Identities = 453/458 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctcacttctcggcaaatgacagttgaatcaggctaggtaacaaattgattag 64
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctcacaacttggcaaatgacagttgaatcaggctaggtaacaaattgattag 264

                                                                       
Query: 65  ggtatgtacacatgtgctgcacagtggcctctgtccacatcattttacaggatataaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtatgtacacatgtgctgcacagtggcctctgtccacatcattttacaggatataaaaa 324

                                                                       
Query: 125 catgacttaacattttaaataatcattacattagggttggagcaaatattctagtgaagc 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 catgacttaacattttaaataatcattaaattagggttggagcaaatattctagtgaagc 384

                                                                       
Query: 185 actacaaccacggtggaatctgaagcacactgaattttatatgtacttaaatgcttatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actacaaccacggtggaatctgaagcacactgaattttatatgtacttaaatgcttatta 444

                                                                       
Query: 245 cctgcaatctattaatgcatgctatcattaaggtaattcatactcatttcaaatcccttg 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctgcaacctattaatgcatgctatcattaaggtaattcatactcatttcaaatcccttg 504

                                                                       
Query: 305 actctagaatctacattaaaagtactcagaatcactaccattgatttgtgggatgctgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actctagaatctacattaaaagtactcagaatcactaccattgatttgtgggatgctgta 564

                                                                       
Query: 365 ttgtagggatttaattaaacaaatgatagacctctctgataattaatggaaataaacatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgtagggatttaattaaacaaatgatagacctctctgataattaatggaaataaacatt 624

                                                 
Query: 425 ctatatccaagaggaatatagactattaactatgtggt 462
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctatatccaagaggaatatagactattaactatgtggt 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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