BAC Information

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BAC

Clone NameMSMg01-394E21
Chromosome13 (Build37)
Map Location 16,113,874 - 16,114,327
singlet/doubletsinglet
Overlap geneInhba
Upstream geneLOC670994, EG625121, Gli3, LOC665157
Downstream geneLOC625181, LOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394E21.T7 (MSMg01no394_e21.b1)MSMg01-394E21.TJ (MSMg01no394_e21.g1)
ACCAG495392AG495393
length858764
length of high quality
(start - end)
59 (49 - 107)456 (79 - 534)
definitionCHROMAT_FILE: MSMg01no394_e21.b1 PHD_FILE: MSMg01no394_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:38 2005CHROMAT_FILE: MSMg01no394_e21.g1 PHD_FILE: MSMg01no394_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCTATGTATCTATGTATGTATGTATGTATGTATGTATGTATG
TATGCATNGCTCCATGTCTCTTCCTCCCTTCTCCTCTCCTTCTCCCTCTC
CCTCCCTCTCTCTCTTCTCTCTTCCTCTCTCCCTTCCTCCTCTCTTTCCT
CCTCTTTCCCCCTCTTTCCCCCCCTCTCTCCCCCTTTCCCATCCCCCTTC
CCCCTACTTTTCTCCCCTTTTTCTTCCCTTCTTTCTCCCTTCCCTTCTCC
CCCTCCTTCTCCTCCCTCCTCTCTTTTTCTTTTCATTTTTCTTCCTTTTT
CCTCCCTCTTTCCCTTTTCCTCCTCCTTCCCCTTCTTCCTTCCTTTCTCC
CCTTTTTCTCCTTTTTCTCCTTTCCCCCTCCCCCCCCCCCTCCTCCCCTT
CTTCCCTTTCCCCCCCCCCCCCCTTTCTCTTTCCTATCTTCCCTTTTCTC
CTTTTTTCCCCTCCTTCCCTCCCTTCCTTTTCTCTTCTCCTTCCCTCATC
TTTTCCCTTCTACCCTTTTCTCCTCTCTTTCCTTCCCCCTATTATCCTCC
TTCCTCCTCTTCCTAACCTTCCTCCCCTCTTTCCCATCCTCCCCTTCCTC
CCTCTCTTTTCCCTTCCTCTTCCTTTTCTCTCTCTTTACCCCTTTTTCCC
TTTCCCCTTCTCTTTCTTTTCACTTTTATCCCCCTTTCTTCCCTTTCTCC
TTCTCATCCCTTTCCCTCTCCTTTCTTTTATCTCCCTTATTCCCCCCCTT
TATCCTCCTTCTCTCTTACCATACCTTTTCCACTCCTCTTCCCTTCCTCT
CCCCCTTC
NNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGAAATGCTGCCTGGTGGG
GGACCTTGACAGAAAGTCTACATAAGCCTAAAAGAAGGATGTTTGTAGCA
ATTCTCTTTTGCTTTCAGGGGTTCTCACTAGCTTGATCATGAAGGTATGC
CAAGGCTTAAGTAAACAGGCTCCTTTTTACTTAAAAGGTATGCAAATTCC
ACATACACAAAAAAGTCCTCCTCTCAGATTTGTGGGATATCTGATAATTC
CCCATTAAATAATCAGTATACACATAAAGTTTCAGCTTAATTAGCCTGGT
TTTCCTCATCAACATCCTGGGTAAAATATGCTGCCCTTTTACAAATCGGT
AATAATGACGTCTCTGTTAATGTAGAAAGCCTTGGCATTCACAGTGCACA
TTTAAACTTGCCATGAGGGGAGCACAGCTCTGCTGTAAAATATGTGTTAC
TTANATTTTCCATTCTTCATCAAGTTTCCCTGTGCCTAGATACAGTACAG
TCAGGAGCATGAAGGGCCTACACTACAGGCTGTGCGTTCTCTCGGGCACT
AAGTCGGCCTCTGGATGGCTTCCAGAGGTGTCTGCGGAAGGCAGCGAGTA
AAATCTGAAAGGTTTTTTTTCCCTTGACCTACAGNAAAAAACCTTGCCCT
GCAGGGATATTAACTTGCTTGTAAAAATAACCCCGGCGAACCATTTAACT
TTAATACACTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_e21.g1 MSMg01no394_e21.g1 CHROMAT_FILE:
MSMg01no394_e21.g1 PHD_FILE: MSMg01no394_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:39 2005
         (456 letters)



>mm_chr13_16113674_16114527
          Length = 854

 Score =  849 bits (439), Expect = 0.0
 Identities = 451/456 (98%), Gaps = 2/456 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgaaatgctgcctggtgggggaccttgacagaaagtctacataagcctaaaagaagg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 654 cattgaaatgctgcctggtgggggaccttgagagaaagtctacataagcctaaaagaagg 595

                                                                       
Query: 61  atgtttgtagcaattctcttttgctttcaggggttctcactagcttgatcatgaaggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atgtttgtagcaattctcttttgctttcaggggttctcactagcttgatcatgaaggtat 535

                                                                       
Query: 121 gccaaggcttaagtaaacaggctcctttttacttaaaaggtatgcaaattccacatacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gccaaggcttaagtaaacaggctcctttttacttaaaaggtatgcaaattccacatacac 475

                                                                       
Query: 181 aaaaaagtcctcctctcagatttgtgggatatctgataattccccattaaataatcagta 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 --aaaagtcctcctctcagatttgtgggatatctgataattccccattaaataatcagta 417

                                                                       
Query: 241 tacacataaagtttcagcttaattagcctggttttcctcatcaacatcctgggtaaaata 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 416 tacacataaagtttcagcttaattagtctggttttcctcatcaacatcctgggtaaaata 357

                                                                       
Query: 301 tgctgcccttttacaaatcggtaataatgacgtctctgttaatgtagaaagccttggcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgctgcccttttacaaatcggtaataatgacgtctctgttaatgtagaaagccttggcat 297

                                                                       
Query: 361 tcacagtgcacatttaaacttgccatgaggggagcacagctctgctgtaaaatatgtgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tcacagtgcacatttaaacttgccatgaggggagcacagctctgctgtaaaatatgtgtt 237

                                               
Query: 421 acttanattttccattcttcatcaagtttccctgtg 456
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 236 acttaaattttccattcttcatcaagtttccctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 854
Length adjustment: 10
Effective length of query: 446
Effective length of database: 844
Effective search space:   376424
Effective search space used:   376424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)