Query= MSMg01no394_m21.b1 MSMg01no394_m21.b1 CHROMAT_FILE:
MSMg01no394_m21.b1 PHD_FILE: MSMg01no394_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:19 2005
(429 letters)
>mm_chr13_57138373_57139201
Length = 829
Score = 630 bits (326), Expect = 0.0
Identities = 393/438 (89%), Gaps = 41/438 (9%)
Strand = Plus / Minus
Query: 1 tatgtggctggaatctgcaatttttttattcactctgagaacttctgtctcttgatggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatgtggctggaatctgcaatttttttattcactctgagaacttctgtctcttgatggct 362
Query: 61 atttaggtggctgatggtccagctttccatcactgtgacaagactgtaagagaaactaca 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 361 atttaggtggctgatggtccagctttccatcattgtgacaagactgtaagagaaactaca 302
Query: 121 gagaagtatttgttttgcctgacagtgtagactggctccatcattcctgggtctcagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagaagtatttgttttgcctgacagtgtagactggctccatcattcctgggtctcagtga 242
Query: 181 ggcagtactttatggcagagggggtggtgagaattgtgcgctctctctcttgcactctct 240
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcaatactttatggcagagggtgtggtgagaattgtgcgctctctctcttgcactctct 182
Query: 241 ctctc--------cctccctcctttcctccctcactcctctctct--------ctctccc 284
||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 181 ctctctctctctccctccctcctttcctccctcactcctctctctgtctctctctctccc 122
Query: 285 tttctgtctctctctctctctttctctctctctctctctctgtctctgtctctctctgtt 344
||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 121 tttctgtctctctct------ttctctctctctct------gtctctgtctctctctgtc 74
Query: 345 cctctctgtctctctccctgactccctccccccctctgtttgtctctctctctctctctc 404
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 73 cctctctgtctctctccctgac-----ccccccctctgtttgtctctctctctctct--- 22
Query: 405 tantgngtgtgtgtgtgt 422
| ||||||||||||
Sbjct: 21 -a----gtgtgtgtgtgt 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_m21.g1 MSMg01no394_m21.g1 CHROMAT_FILE:
MSMg01no394_m21.g1 PHD_FILE: MSMg01no394_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:19 2005
(413 letters)
>mm_chr13_56953245_56954057
Length = 813
Score = 783 bits (405), Expect = 0.0
Identities = 411/413 (99%)
Strand = Plus / Plus
Query: 1 tccctgcacacatttgtttatgtagaacaaacaggttaaaaaaagagtttaacagcctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctgcacacatttgtttatgtagaacaaacaggttaaaaaaagagtttaacagcctgc 260
Query: 61 cagtaagacaggtccataggagtttcagtagactgtgtgtcccctcaccctgttttcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtaagacaggtccataggagtttcagtagactgtgtgtcccctcaccctgttttcttt 320
Query: 121 tttgcaagctgggaagggcaggatgtggggatgcagtgataactcaggctgttgtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgcaagctgggaagggcaggatgtggggatgcagtgataactcaggctgttgtgatgg 380
Query: 181 gagcaggccagaatagcattcagtgatttcttccattgacttgaaactctcaggaaaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcaggccagaatagcattcagtgatttcttccattgacttgaaactctcaggaaaggt 440
Query: 241 ccccgctgcatctctatgactgcaggatccactgggattcacctctctgcttcatctatg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccactgcatctctatgactgcaggatccactgggattcacctctctgcttcatctatg 500
Query: 301 agactggtgggccagggctagtggcagggtttccctggagagcgagatgcattttctatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agactggtgggccagggctagtggcagggtttccctggagagcgagatgcattttctatg 560
Query: 361 actcaaaggggcatactgtagagagagtctgtactctggggtcagccttgaat 413
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 actcaaaggggcatactatagagagagtctgtactctggggtcagccttgaat 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
