BAC Information

Click to search

BAC

Clone NameMSMg01-394O01
Chromosome13 (Build37)
Map Location 15,539,340 - 15,539,790
singlet/doubletsinglet
Overlap genenone
Upstream geneHecw1, Mrpl32, Psma2, AW209491, EG665099, LOC670994
Downstream geneEG625121, Gli3, LOC665157, Inhba, LOC625181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394O01.T7 (MSMg01no394_o01.b1)MSMg01-394O01.TJ (MSMg01no394_o01.g1)
ACCAG495830AG495831
length755757
length of high quality
(start - end)
470 (76 - 545)548 (83 - 630)
definitionCHROMAT_FILE: MSMg01no394_o01.b1 PHD_FILE: MSMg01no394_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:25 2005CHROMAT_FILE: MSMg01no394_o01.g1 PHD_FILE: MSMg01no394_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGAGATTACTTTCCAGGAGAAAAATCACTTTGCTTGCT
CCTTCTTTCATAAACATGTACAGGCAAATCACTCTCTAAGTGCACACAGC
CAGCAAGCCTTTCCTGTGGACGACCAGACAGAGATGCAACATCTCTGTTT
TCTGGAGTGTATGCAACCAGAAGAGCTTTGGATTTGGATTCTTCTAGATT
GTAGGATATGTGTATATGCCCAGTGGTTATTTTGGAGATAAGAGCAATGC
TTAAACATGAAATTGATTTGTGTTTCTTATTTATACATATACATATACAT
ATACATATACATATACATATACATATACATATACATATACATATACATAT
ACATATACATATACATATACATATACATATACATATACATATACATATAC
ATACCCTCTAGACAATGGTTTGCCCTAGTTTAAATATTTTTGTGCATGCA
ACATGAGCTCATAATCTGGAACTCTCCACTGCGGCATCATGCCAGCTCTC
TGAATGTTTTGGACATAGGAGCATTCTGGTCTATATTCGTTTGGTTGAGC
GATGCTCATTTGTTTATACACCTTTTCGTATCTGTTCAGTGACCTTTTTC
CCTCCAGCCCGTCTTGCTTGGCCTCGTTAATCCCTTAACTTCTAATTTTC
GCCACTAGAATACTGTCTTTGCCTTCCTACCGCAAATCCTCGTTATGTGC
CCTTT
NNCCTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGTCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
TGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCCGTCTGGCGGTTCCTCATATTATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGGTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCCAAATCTAGGATACCCAAGATATAAGATAC
TATTTTCCTAACCTATTGAACTCAAGAAAAAGGAGACTGAAGTGTGGGAC
CTATGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_o01.b1 MSMg01no394_o01.b1 CHROMAT_FILE:
MSMg01no394_o01.b1 PHD_FILE: MSMg01no394_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:25 2005
         (470 letters)



>mm_chr13_15539340_15540209
          Length = 870

 Score =  714 bits (369), Expect = 0.0
 Identities = 435/465 (93%), Gaps = 14/465 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggagaaaaatcactttgcttgctccttctttcataaacatgtacaggcaaatcactct 60
           ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 451 caggagaaaaatcactttgtttgctccttctttcataaacatgtacaagcaaatcactct 392

                                                                       
Query: 61  ctaagtgcacacagccagcaagcctttcctgtggacgaccagacagagatgcaacatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctaagtgcacacagccagcaagcctttcctgtggacgaccagacagagatgcaacatctc 332

                                                                       
Query: 121 tgttttctggagtgtatgcaaccagaagagctttggatttggattcttctagattgtagg 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tattttctggagtgtatgcaaccagaagagctttggatttggattcttctagattgtagg 272

                                                                       
Query: 181 atatgtgtatatgcccagtggttattttggagataagagcaatgcttaaacatgaaattg 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atatttgtatatgcccagtggttattttggagataagagcaatgcttaaacatgaaattg 212

                                                                       
Query: 241 atttgtgtttcttatttatacatatacatatacatatacatatacatatacatatacata 300
           |||||||||||            ||||||||||||||||||||||| ||||| ||||| |
Sbjct: 211 atttgtgtttc------------atacatatacatatacatatacacatacacatacaca 164

                                                                       
Query: 301 tacatatacatatacatatacatatacatatacatatacatatacatatacatatacata 360
           |||| ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||||||||  |
Sbjct: 163 tacacatacacatacacatacacatacacatacacatacatatacacatacatatac--a 106

                                                                       
Query: 361 tacatatacatatacataccctctagacaatggtttgccctagtttaaatatttttgtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tacatatacatatacataccctctagacaatggtttgccctagtttaaatatttttgtgc 46

                                                        
Query: 421 atgcaacatgagctcataatctggaactctccactgcggcatcat 465
           |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 45  atgcaacatgagttcataatctggaactctccactgtggcatcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)