BAC Information

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BAC

Clone NameMSMg01-395E24
Chromosome13 (Build37)
Map Location 113,669,709 - 113,835,431
singlet/doubletdoublet
Overlap geneSkiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik
Upstream geneLOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282
Downstream geneCdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395E24.T7 (MSMg01no395_e24.b1)MSMg01-395E24.TJ (MSMg01no395_e24.g1)
ACCAG496161AG496162
length800780
length of high quality
(start - end)		431 (45 - 475)405 (72 - 476)
definitionCHROMAT_FILE: MSMg01no395_e24.b1 PHD_FILE: MSMg01no395_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:07 2005CHROMAT_FILE: MSMg01no395_e24.g1 PHD_FILE: MSMg01no395_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,835,005 - 113,835,431)(113,669,709 - 113,670,113)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACTTTGATATCTTTTTACTCCTGTGACCATCATGGTGAAGGCCTA
ATGTGAAGCGTGGCCATGCCTGCTTTCCCAGGTACTTCAACTCTCCAGTA
ATCTAACTGCCCTTTGGGGCAGTCTCCCTGCCTTGTACTAATGCTGCACA
CTTCAGGGATACCTGATGGCAGCACATCATTAACTGAGTATGTCTTTATG
CTTACTTTTATGGTGGCCTCTTTATCTGAGTCATTATCCTCAAGGTTGAC
CTGTCAGTTTGCCAGGGTTTTGCAGAGATCCAAAGCAAAATAACTTATTT
TCAAAACCCAGTCATGTGAGGGTTCCTCTATAATTAAAGTAGCCACGGGA
ATCTATTTCCACGGCCATCTATTTAAAGCAAGCTAAAGCACTTGTAAGAC
AATGAACAGGAACCCTGTGGCTTTTATTTCTGGGGTATACAGAANAAGTA
GGACAGGAACCCTTTCTTGAGCAAACATCCCAGTAAAATCTAACAAGAAA
TCTTGCAAACACTATAGCTCTTCGGTTCTTAAATTCTTAATTGTGGGGGG
GTGGGGTGAACTTTTTGAAACCAACTCCTCCCCATAACAAAATAGGCGCA
AACCAATTTGGAACTTCCCGCCCCCCCTTCGTGATAAAAAAATATATGTA
AAGCCCAATTTTAAAAAGATATACCCTCTTTTTCTCCTTCCCCTATAAAA
AATCCCTAATCCCCTTTTTTTCCCCTTCCACAATTTTTTATAATATTCTT


CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCTGCTCATGGGCCACCGGCCTATGGCT
TTCAAATGGAGGACAGAGTCAGACTAGCTTCTGAGGCAGGAAACACTCAT
CATGATGGAAAAACAACTGATGTACTTTAAAGATGCACTGAGAAAGAAAA
ACAATACGTCCTTTCCTGCATCATCGACAACTGCATTACCACACGGTTCA
CCCCCGTATGTGTGACAACTTCCATTTAAACAATACAAAATCAGTTCTCT
AGTCTCGAGTAACCATTTCAAGTGTTAAATCCTTACACATGGCTAATGAC
CACACAGAACAGTGAAGGTACAGAACATTTTAATCACAGAAGGGAGTTCT
ATAGGAGAATAGCTGCTACTATCCTAGCAAGAGGTAGAATTTTGTTCTCT
ATTGACTTTAAGAGAATTTTGACTCAAATGTAATCAAAAGACTGATTGTA
CTGCAGTAAACTCTCTAAGCTAGATTACAAAACATCCTCCGAAAACACTT
CTACCTCCCTATAAGGCCAATTCTGAATTGATCATGCTATGAGAAGCCCC
AACTGGCCCCCCCCGAAGGGAAAAAGGAAAAAAAGGTGGTATTCTCTTTT
TTTCCTCCCCTTTTTTCTCTTTCCCCTCATTCCTTCTCGTTTTATTTTTC
TACCTCATTTTTTTTTTCCTTTTTTTCCTTAATGTTCAACATCTTCTCCT
TCACTTCTTTCCCTTCTTTCTCCTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_e24.b1 MSMg01no395_e24.b1 CHROMAT_FILE:
MSMg01no395_e24.b1 PHD_FILE: MSMg01no395_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:07 2005
         (431 letters)



>mm_chr13_113834801_113835631
          Length = 831

 Score =  810 bits (419), Expect = 0.0
 Identities = 425/427 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctactttgatatctttttactcctgtgaccatcatggtgaaggcctaatgtgaag 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaattctactttgatatgtttttactcctgtgaccatcatggtgaaggcctaatgtgaag 572

                                                                       
Query: 65  cgtggccatgcctgctttcccaggtacttcaactctccagtaatctaactgccctttggg 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 571 cgtggccatgcctgctttcccagatacttcaactctccagtaatctaactgccctttggg 512

                                                                       
Query: 125 gcagtctccctgccttgtactaatgctgcacacttcagggatacctgatggcagcacatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gcagtctccctgccttgtactaatgctgcacacttcagggatacctgatggcagcacatc 452

                                                                       
Query: 185 attaactgagtatgtctttatgcttacttttatggtggcctctttatctgagtcattatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 attaactgagtatgtctttatgcttacttttatggtggcctctttatctgagtcattatc 392

                                                                       
Query: 245 ctcaaggttgacctgtcagtttgccagggttttgcagagatccaaagcaaaataacttat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctcaaggttgacctgtcagtttgccagggttttgcagagatccaaagcaaaataacttat 332

                                                                       
Query: 305 tttcaaaacccagtcatgtgagggttcctctataattaaagtagccacgggaatctattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tttcaaaacccagtcatgtgagggttcctctataattaaagtagccacgggaatctattt 272

                                                                       
Query: 365 ccacggccatctatttaaagcaagctaaagcacttgtaagacaatgaacaggaaccctgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccacggccatctatttaaagcaagctaaagcacttgtaagacaatgaacaggaaccctgt 212

                  
Query: 425 ggctttt 431
           |||||||
Sbjct: 211 ggctttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no395_e24.g1 MSMg01no395_e24.g1 CHROMAT_FILE:
MSMg01no395_e24.g1 PHD_FILE: MSMg01no395_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:07 2005
         (405 letters)



>mm_chr13_113669509_113670313
          Length = 805

 Score =  760 bits (393), Expect = 0.0
 Identities = 402/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgctcatgggccaccggcctatggctttcaaatggaggacagagtcagactagcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgctcatgggccaccggcctatggctttcaaatggaggacagagtcagactagcttc 260

                                                                       
Query: 61  tgaggcaggaaacactcatcatgatggaaaaacaactgatgtactttaaagatgcactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaggcaggaaacactcatcatgatggaaaaacaactgatgtactttaaagatgcactga 320

                                                                       
Query: 121 gaaagaaaaacaatacgtcctttcctgcatcatcgacaactgcattaccacacggttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagaaaaacaatacgtcctttcctgcatcatcgacaactgcattaccacacggttcac 380

                                                                       
Query: 181 ccccgtatgtgtgacaacttccatttaaacaatacaaaatcagttctctagtctcgagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccgtatgtgtgacaacttccatttaaacaatacaaaatcagttctctagtctcgagta 440

                                                                       
Query: 241 accatttcaagtgttaaatccttacacatggctaatgaccacacagaacagtgaaggtac 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accatttcaattgttaaatccttacacatggctaatgaccacacagaacagtgaaggtac 500

                                                                       
Query: 301 agaacattttaatcacagaagggagttctataggagaatagctgctactatcctagcaag 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaattttaatcacagaagggagttctataggagaatagctgctactatcctagcaag 560

                                                        
Query: 361 aggtagaattttgttctctattgactttaagagaattttgactca 405
           ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 aggtagaattttgttttctattgactttaagagaattttgactca 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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