BAC Information

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BAC

Clone NameMSMg01-395F07
Chromosome13 (Build37)
Map Location 89,763,210 - 89,763,520
singlet/doubletsinglet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266
Downstream geneVcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395F07.T7 (MSMg01no395_f07.b1)MSMg01-395F07.TJ (MSMg01no395_f07.g1)
ACCAG496175AG496176
length809785
length of high quality
(start - end)
447 (49 - 495)418 (81 - 498)
definitionCHROMAT_FILE: MSMg01no395_f07.b1 PHD_FILE: MSMg01no395_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:08 2005CHROMAT_FILE: MSMg01no395_f07.g1 PHD_FILE: MSMg01no395_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:09 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACCAGAGCAGAAGGAGAAAGAAGTAAGAAAGTCAGATATAAT
AGAATAATTATGCACACCAAGGCCAATTGAAAAGCAGTCAGGCACAAATG
AAATCTATACAGCCGTTGTCTAGTTCTAAGGTTAGGAGAAATGGGAACAA
CTGTTTTTCACAAAGACTTGCCATGGATTGGAGATGCTATGTCTTTATCC
CGGCCTACTGCAGGCAGTCCCTTATTTCAGATGGCTGGTCCCCTGAAGGG
ATGTGTCTCCTGATTCTCAGGGTCCCAGATGCCTACTACAGGCTGTCCCT
GTCATTGTATGCTGTCCCCAGCAGAAAATAATATGGAAACAGGAAGAACT
GGTTTGTACAATGAATACTGATGTATGGCATGTAAATACAAAATGGCTGC
TTCCAGGGATGAAGGTAAGAAAAAATGCAAATAACATGCATCTTTTCTCC
TTGGATGAAAGTACAGATAGATATATGTATGACTAATTCTATTAAAACCT
TAATGTTTTATATTTGCTAATCCCCTTTCCGTTACTATATATTACCGAAT
ATCTGGGAAAACCCCCCCGAGATACGTATATTTCTCACCCCCCGCCCCTA
AAACACCCCTTAATTATTTGTCCTCCCCAAGTAAGCAAGCTAAAGGAATA
ATTCAGAAATTTCTTATTGAAAAAACCCCCCCCCCCCGGGTTGCAAAAAT
TTTGGTAAACAAATAAAAACAACGCCCGTGTATTATTTAACAAAAAATAG
CCCTCCCCN
NNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATCCATCTCCAATTT
ATTCTTGGAACTAAAGTTCTGATACTGGACTTTAAGGTTCCCAAAAGGTC
TTTCTCCTCAAACAATGAATTCTTATCTCCTATGACTTATCATACCCACA
CACACAACACACACACACAAACACACACACAAGCACACACATCACACACA
CACACACACAAACACACACACACACATACACACACACACACACACACACA
CACACACACACACACACACACACACACACACAGATGCCTATGTATACATG
ATTCTTCCAGGGAGAAAGATGAAGGTGCTGTATCACCCCCAAGTCCTAAA
TGCTTTTTACATTTAGATGATATGAATTAATTTATCTAAATAATCCAATA
GCCAAAGTTACAATTACAATTAAATCAGNTAATTTTGGCACATGTCAGNA
CAAACCCACTCCCTGCAGGATTTCCTTTGCCAAGAACATAGTTGCTCCAT
TCTTGGCTCAAGAAAAATGTTTCTTGCCTAAAAACCTCTAAGGGGCTGAG
AAGGTCATGGGGGAAGGGGAATTGATACTTTCCAGCCCGGTGGGTACAAA
TTCTCATTGGGTCGAAAAAAGGGGAGGCCCGAAAAAAATTCCCCCCAAAA
TCGGAAAAACTGGGGATGGATAAAAAAGAAAAAAACTTTTAATAAATCAC
TCATCCCAAAAAATTGGGGCCCTCCTCCTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_f07.g1 MSMg01no395_f07.g1 CHROMAT_FILE:
MSMg01no395_f07.g1 PHD_FILE: MSMg01no395_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:09 2005
         (418 letters)



>mm_chr13_89762757_89763574
          Length = 818

 Score =  472 bits (244), Expect = e-137
 Identities = 292/313 (93%), Gaps = 14/313 (4%)
 Strand = Plus / Minus

                                                                       
Query: 118 acacacacaacacacacacacaaacacacacaca-agcacacacat-------cacacac 169
           |||||||| ||||||||||||||||||||||||| | |||||||||       |||||||
Sbjct: 764 acacacac-acacacacacacaaacacacacacaca-cacacacatacacacacacacac 707

                                                                       
Query: 170 acacacacacaaacacacacacacaca-t-acacacacacacacacacacacacacacac 227
           ||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 706 acacacacacacacacacacacacacactcacacacacacagacacacacacacacacac 647

                                                                       
Query: 228 a--cacacacacacacacacacacacagatgcctatgtatacatgattcttccagggaga 285
           |  |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 646 aaccacacacacacacacacacacacacatgcctatgtatacctgattcttccagggaga 587

                                                                       
Query: 286 aagatgaaggtgctgtatcacccccaagtcctaaatgctttttacatttagatgatatga 345
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aagatgcaggtgctgtatcacccccaagtcctaaatgctttttacatttagatgatatga 527

                                                                       
Query: 346 attaatttatctaaataatccaatagccaaagttacaattacaattaaatcagntaattt 405
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 526 attaatttatctaaataatccaaaagccaaagttacaattacaattaaatcagttaattt 467

                        
Query: 406 tggcacatgtcag 418
           |||||||||||||
Sbjct: 466 tggcacatgtcag 454



 Score = 83.9 bits (43), Expect = 2e-20
 Identities = 50/53 (94%), Gaps = 3/53 (5%)
 Strand = Plus / Minus

                                                                
Query: 203 cacacacacacaca--cacacaca-cacacacacacacacacacacacacaca 252
           ||||||||||||||  |||||||| ||||||||||||||||||||||||||||
Sbjct: 818 cacacacacacacaagcacacacatcacacacacacacacacacacacacaca 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 217
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 2
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)