BAC Information

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BAC

Clone NameMSMg01-395K07
Chromosome13 (Build37)
Map Location 16,104,083 - 16,104,327
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670994, EG625121, Gli3, LOC665157
Downstream geneInhba, LOC625181, LOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395K07.T7 (MSMg01no395_k07.b1)MSMg01-395K07.TJ (MSMg01no395_k07.g1)
ACCAG496413AG496414
length797771
length of high quality
(start - end)
247 (72 - 318)364 (81 - 444)
definitionCHROMAT_FILE: MSMg01no395_k07.b1 PHD_FILE: MSMg01no395_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:33 2005CHROMAT_FILE: MSMg01no395_k07.g1 PHD_FILE: MSMg01no395_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGTCTTCGGACGTGCGCTGGTCAGCGCAGCTCTGAGCGGGGTT
GGTTTCTCTTTCACTTCCTGCCCCTCCCGCGGAGACTCCCTGCACCCAGG
CCCTGTCCCTTTTCAGCTTGCCACCGTACCTTGAGCAGCACCTGCTGGCA
GTTTCCAGGGATCACTCCCGAATGCGCAGCTCCAGCCCGGCTCGCGGGAC
GCCTGGACTCAGGGGCCAAGCTGGTCCAAGCGGCCGCCTCTATTTTTACC
CTGAACACCAGCAAGGTTTTCTCNTGTTTAAAAGCGCAGCTCTTGATTTT
TCCCCCCCTTTTGGCAGCTAAAGAATTCAGGGAGGGGAAAGAAAAAAAAA
AAAATCACTGTTCAGTGACTGCACCCGGCAATCTCTGATCCCAGACCTCG
GTGCCAGGGAATGTCAGGTACCATGACCCCGCGTGGGTCTGCCGGTCTCC
TTGGCCATCGATTCGAGTGTTTTTTCACGCCCTGACCCTCAAATGTTCCT
TTCTGAGTGTATAATCCGTCTCCTCCGCCTACCGTATTTTTTTACCGTTT
CTTTTTCTTTCTCTCCCCCCCTCCTATTCCATGACCTTCTCTCCCCCCCG
TACACTTTATTTCTCCCCTCTTAATCTTACCCCCCTCTTTTTCCCCCACA
GCCCTGCCACACTCCCTAATCCTAACCCCCTCCCCCCCCTCTTTTTTTTC
TCCCTTTATTACTTCTACAACCCCCCTTCCTTCTTTTCTTTTCTCCG
TCTCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGATTAGAAATAATATTCA
GATAGAAATACTGAAGAAAATTCAAGCTGAAACAAGATGAGATAAAAATA
CCTGATAAGTTAGAAAACACGGGGGAAAGCCATATAAGTAAAGTGAATCA
AATAGAGGATAAAACATTAAATCTTAAAGATGAAGTCGAGAAATTAGACC
ACATAATCAAAGACAATGGACAAAATTAAAAGCACAGAAAAGGAACATGT
AGGGTCTGTGAGATACCATGTGAATGTTTAACCTTTGAGTTACAGGCATC
AATAGGAGAGAAGAATCCCAGGTCAATGTTATAGACCAGATCTCCTATGA
GATCATCATAGAAAACGTCCAAACTAACGAAGAACATACCCATACAGATA
CAAGTTACCAAATACCAGCAGTCTAGCCAATTGCATGGGGCAAATGAAGT
CATAGATCTCAGAGAAGAATCTACTCTAAACCAGCATACTTCCTGAGTAT
GCAAATACTATCCTTGTATTCACAGATATATGTAGCTCTCACACCTCATC
ATATACGCCTTTTGCCGAAAACAGACGGTTTCCAAAAGCCCCAACTATTT
TAAACCGCTAAAACATTTGACTTGTGGATGGCCAACCCCCCCTTATTTAA
TCTTTTACTCCCCCGTCCGTGTGCTTTACGCCCCATTATACTTTTCTTTT
CCTTTTCCGGAACAATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_k07.b1 MSMg01no395_k07.b1 CHROMAT_FILE:
MSMg01no395_k07.b1 PHD_FILE: MSMg01no395_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:33 2005
         (247 letters)



>mm_chr13_16103883_16104529
          Length = 647

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgctggtcagcgcagctctgagcggggttggtttctctttcacttcctgcccctcccgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgctggtcagcgcagctctgagcggggttggtttctctttcacttcctgcccctcccgcg 386

                                                                       
Query: 61  gagactccctgcacccaggccctgtcccttttcagcttgccaccgtaccttgagcagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagactccctgcacccaggccctgtcccttttcagcttgccaccgtaccttgagcagcac 326

                                                                       
Query: 121 ctgctggcagtttccagggatcactcccgaatgcgcagctccagcccggctcgcgggacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgctggcagtttccagggatcactcccgaatgcgcagctccagcccggctcgcgggacg 266

                                                                       
Query: 181 cctggactcaggggccaagctggtccaagcggccgcctctatttttaccctgaacaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctggactcaggggccaagctggtccaagcggccgcctctatttttaccctgaacaccag 206

                
Query: 241 caagg 245
           |||||
Sbjct: 205 caagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)