Query= MSMg01no395_n09.b1 MSMg01no395_n09.b1 CHROMAT_FILE:
MSMg01no395_n09.b1 PHD_FILE: MSMg01no395_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:48 2005
(347 letters)
>mm_chr13_115547308_115548055
Length = 748
Score = 629 bits (325), Expect = 0.0
Identities = 340/345 (98%), Gaps = 1/345 (0%)
Strand = Plus / Plus
Query: 4 gaattcatttttcataatttaaatattccccttaaatccctattggcatagaattagctt 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatttctcataatttaaatattccccttaaatccctattggcatagaattagctt 263
Query: 64 ttaaaacttgaatgccagagagtgaggagatattggtaatacaatagtgatgatagctat 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaaaacttgaatgccagagaatgaggagatattggtaatacaatagtgatgatagctat 323
Query: 124 atctgtacctatgggctctgcagtaattgactaaaatacataaacatctggaagctagtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atctgtacctatgggctctgcagtaattgactaaaatacataaacatctggaagctagtt 383
Query: 184 tagttcttgttcatctctcatcaattacatggccaatgaactgttgttggt-tttttttt 242
||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 384 tagttcttgttcatctctcatcaattacatggccaatgagctgttgttgttgtttttttt 443
Query: 243 tctaaaagagactattattagaatttatgaaaagaacttcaagttcctttttggaactat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctaaaagagactattattagaatttatgaaaagaacttcaagttcctttttggaactat 503
Query: 303 tgttagctggtactgggagggttgttctgaacatgtactgccacc 347
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgttagctggtactgggagggttgttctgaacatgtactgccacc 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 748
Length adjustment: 9
Effective length of query: 338
Effective length of database: 739
Effective search space: 249782
Effective search space used: 249782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no395_n09.g1 MSMg01no395_n09.g1 CHROMAT_FILE:
MSMg01no395_n09.g1 PHD_FILE: MSMg01no395_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:48 2005
(243 letters)
>mm_chr13_115681134_115681776
Length = 643
Score = 455 bits (235), Expect = e-132
Identities = 241/243 (99%)
Strand = Plus / Minus
Query: 1 ttagaagagaggagaggtgagcgagctgcccatcaaagttcccagtgggacagaaagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttagaagagaggagaggtgagcgagctgcccatcaaagttcccagtgggacagaaagcag 384
Query: 61 caagttcctcttgtttcttctcacggagataagcacagagctggtgccttgtttctgaga 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 caagttcctcttgtttcttctcatggagataagcacagagctggtgccttgtttctgaga 324
Query: 121 aacagaatactttagctcagtaatgctaaattttaatttctcagtctatctctcataggc 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 323 aacagaatactttagctcagtaatgctaaattttaatttcccagtctatctctcataggc 264
Query: 181 tttggtgaagaggtgtagaaacataaattaatagaagtcacctgtatgaattaatctggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttggtgaagaggtgtagaaacataaattaatagaagtcacctgtatgaattaatctggt 204
Query: 241 att 243
|||
Sbjct: 203 att 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
