BAC Information

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BAC

Clone NameMSMg01-396M11
Chromosome13 (Build37)
Map Location 39,439,479 - 39,439,671
singlet/doubletsinglet
Overlap genenone
Upstream geneBmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
Downstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik, Ofcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396M11.T7 (MSMg01no396_m11.b1)MSMg01-396M11.TJ (MSMg01no396_m11.g1)
ACCAG497273AG497274
length750756
length of high quality
(start - end)
192 (113 - 304)193 (112 - 304)
definitionCHROMAT_FILE: MSMg01no396_m11.b1 PHD_FILE: MSMg01no396_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:59 2005CHROMAT_FILE: MSMg01no396_m11.g1 PHD_FILE: MSMg01no396_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAAACGACTCACTTTTTCAAATCATCCGCGGAANNCTTCTATT
CCCGGAAACTTCANGAAAAGAACTGTAGTAGTTCTTGTCAAATGAGCATC
ATGATGCTTCAGTTTCCTTATCTCCGAATCTGGGGGACAAACATTTTACT
TGAAAAATTGATAAGCACATTTGTAGGCATATATTTTTTGCAATCTACTT
TTAATAAGGGTCCAACCTCTTCTCTAGCCCACCACCCTTTCGAAGTAGCA
TTGACACAAATGGTTCTTTGTTAACGACAAGCATGTATCGGTTTGCCTTA
CATAGCTCNGTTTGAGCTGCCATTGATAGAAACTCACCTAAGAACTCATC
TCACGGCTCCTGCTGTAGCCAGTTGGTGAGCCCGGTAGTTTCTTCAGGAC
TGAATCGCAGTTGCTGGTTGGCACCTGATGTCTGCTTGTTGACCAAGCTG
GACTGTAGCTACCATTTTGCGCCTGGTGACTGCCCGCCCACACAGGACTG
GCCAGCACCTGCTGAACTGTACTCGGAGCCCGCCATGTCACTTTCCTTCC
TTACTTATCCTCAATATTTCTAATTACCCCTACCCCGTATTACCCTGTAT
ACCTTTTTTACAGCACCATCTGTCTTTCACAATTCCCTTTTTTTTTTTCA
CCTAAAGCACTCTATCGAACCTTTATAAAGTCTCCAGTAACGCCTCCGCG
GGCCTCCTATACCCACCCCCAGCCATTTTTTCTTTTTTTTTCCCCCTCCG

GGAGGCCTGGAGGACGCCTGGTAGCACAATTTAGGNGAACTATAGAAGTA
CCGCAAACATCCTTCATGGCTTTCATAATGAGATGTTTACAAACCATCCC
ATATAACTGGAAAACAATAGCACCGCGCTCACTGCCTTGATGCCAGTTCA
GTCTCTCTTACATCGTTTGCGTTCTCAGAGGAAATCTGTTCCCATTCCTT
TTCAAAGATTTATTGAAAGCTGTATTTCTAATTTCATATATATGCATTGA
TTAACATCACTTTCCTCCCTCCTCCCTCTACTCTGCCACCCCACAGCTCC
CTACCCTCNNTCAAATTATTTTCTTTAATTATTATTTTTATTGAATTATT
ATTGCTATATATATATGTATATATTGTGAATAAATATGTAAGCACAACCT
GCACGATTTTTTATTTGCATGTATGCCTCTGAATGCTTGTGCATGCTCTA
TGTGTGCTTGTTGTTATGTGTGTCTACGTACCATTTTCTTTTCCCTCCCA
TTTTTACTTTTTTCCCTTCTTCTTTTTTTTTTCTTCCATCTCCTTATCTT
TTTCTTTTTCTTTTCTTTCGCTTATTTTTCTGCTTTTCATTTCACTATAT
CAATTTATTCTCTTTTCTCCTTCCTTTCTATATTTCCTTTTTTTTTTTTT
TTATTTGATTTTTGCGCTTTCTTTCAAATATCTATCTCATTATTTACTTC
ATCTCTTCTTCACTTCTATTATTACCATTTTTTTTCCTATTCTTCATTTA
TCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_m11.g1 MSMg01no396_m11.g1 CHROMAT_FILE:
MSMg01no396_m11.g1 PHD_FILE: MSMg01no396_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:00 2005
         (193 letters)



>mm_chr13_39439279_39439871
          Length = 593

 Score =  373 bits (193), Expect = e-108
 Identities = 193/193 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacaatagcaccgcgctcactgccttgatgccagttcagtctctcttacatcgtttgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aaacaatagcaccgcgctcactgccttgatgccagttcagtctctcttacatcgtttgcg 334

                                                                       
Query: 61  ttctcagaggaaatctgttcccattccttttcaaagatttattgaaagctgtatttctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttctcagaggaaatctgttcccattccttttcaaagatttattgaaagctgtatttctaa 274

                                                                       
Query: 121 tttcatatatatgcattgattaacatcactttcctccctcctccctctactctgccaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttcatatatatgcattgattaacatcactttcctccctcctccctctactctgccaccc 214

                        
Query: 181 cacagctccctac 193
           |||||||||||||
Sbjct: 213 cacagctccctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)