Query= MSMg01no396_n05.b1 MSMg01no396_n05.b1 CHROMAT_FILE:
MSMg01no396_n05.b1 PHD_FILE: MSMg01no396_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:03 2005
(481 letters)
>mm_chr13_77204096_77204976
Length = 881
Score = 899 bits (465), Expect = 0.0
Identities = 478/483 (98%), Gaps = 2/483 (0%)
Strand = Plus / Plus
Query: 1 ctccaggtttagaatttagcattacaatacatagcaataaaccaaacctcaagagcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccaggtttagaatttagcattacaatacatagcaataaaccaaacctcaagagcattc 260
Query: 61 aaaatacatatccttatagccactggtaaatgtagctctcatccctcatcaaagagccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatacatatccttatagccactggtaaatgtagctctcatccctcatcaaagagccct 320
Query: 121 gtcccaaacagagaccttcaaagaaacccataattgtataaaatgtaaaaaaaaatccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcccaaacagagaccttcaaagaaacccataattgtataaaatgtaaaaaaaaatccct 380
Query: 181 gggggagaagcccattcccaaccccttacatcattaatttactcaatcccttacagcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggagaagcccattcccaaccccttacatcattaatttactcaatcccttacagcata 440
Query: 241 cagctgaggctcataaagactgtaagaacatggtacctaggaatgtctcctatgagacat 300
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 cagctgaggctcagaaagactgtaagaacatggtacctaggaatgtcttctatgagacat 500
Query: 301 cattcattcatattctctctctctctctctct--agatcttatgaggccccatccataca 358
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 501 cattcattcatattctctctctctctctctctctagatcttatgaggtcccatccataca 560
Query: 359 cgaagagacataggtgattaatggctgctaagaaagtcttctccaagatccacttggact 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgaagagacataggtgattaatggctgctaagaaagtcttctccaagatccacttggact 620
Query: 419 tgaactttatgcaaagtgacaaatatggacttatttccatttttctacatactgactgcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaactttatgcaaagtgacaaatatggacttatttccatttttctacatactgactgcc 680
Query: 479 agt 481
|||
Sbjct: 681 agt 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_n05.g1 MSMg01no396_n05.g1 CHROMAT_FILE:
MSMg01no396_n05.g1 PHD_FILE: MSMg01no396_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:03 2005
(246 letters)
>mm_chr13_77365144_77365789
Length = 646
Score = 468 bits (242), Expect = e-136
Identities = 245/246 (99%)
Strand = Plus / Minus
Query: 1 tcagtccaccagacaagtgatgtaagaagaggcaacacacaaacgctactgaaagtctta 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 446 tcagtccaccagacaagtgatgtaagaagaggcgacacacaaacgctactgaaagtctta 387
Query: 61 ttatagtggatgatattcatgacatgttccagtaaaggaaggatttaaacagtactataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttatagtggatgatattcatgacatgttccagtaaaggaaggatttaaacagtactataa 327
Query: 121 tatgaaatcagcagggactgcataggggcagagagtgagctgcactttctgcaataccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tatgaaatcagcagggactgcataggggcagagagtgagctgcactttctgcaataccca 267
Query: 181 agtcccctcctgcccgcaggtagaactaggaccccaaagctgggttccttgtagctacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agtcccctcctgcccgcaggtagaactaggaccccaaagctgggttccttgtagctacag 207
Query: 241 cccagg 246
||||||
Sbjct: 206 cccagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
