BAC Information

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BAC

Clone NameMSMg01-397A08
Chromosome13 (Build37)
Map Location 67,086,640 - 67,086,938
singlet/doubletsinglet
Overlap genePtdss1
Upstream geneEG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1
Downstream geneZfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397A08.T7 (MSMg01no397_a08.b1)MSMg01-397A08.TJ (MSMg01no397_a08.g1)
ACCAG497458AG497459
length769788
length of high quality
(start - end)
414 (50 - 463)323 (75 - 397)
definitionCHROMAT_FILE: MSMg01no397_a08.b1 PHD_FILE: MSMg01no397_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:18 2005CHROMAT_FILE: MSMg01no397_a08.g1 PHD_FILE: MSMg01no397_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCNGGAA
TCCAGGACAGTCCCCGCTACACAAAAAAACCCTGTCTCAGAAAACCAAAA
ATAAATAAATAAATCCATATATCAACCAGTAACCCAGGTATAAAACTCCC
ACCCAAACAGCACAAACACAGAAACCAAATCACCTCAAACATAGAGGCCT
AGACACCAGCGAATGAATATAATGAATAATAGCCAGGAAAATATATCACC
AAGAAATCTAAGCTATCCTATCACAGCAGGTCCTGAGAAATTGAAACATG
CAATAGATACAGTGGAAAAATGGTTGTTTGGGCGAAGGGAAAGGAGTGAA
AACATACGGGAAGGTATAGCTGTGCACAAAAGAGATTTAGACAGGCACAC
AGACAGAGAGCAGAGAGAGAGACAGCCACAAGGGTATGGAAATAGAATGG
GGGTGGGGGGAGCACGCTTTCCATCCCTTATCTATTCCTCTTCTTTCCGT
TCCAGCCGCCGGCTCCCTTCCCTCTTCCTTCACGTCTATCCCCCCTCTTT
TTTCTCTTTTTCTCTTATTTCTATCCCTTCACCCCCTTTTTTTCCGCTTT
CTCCTTACCTCCTATCTTTCTGCCTACCCGCCCTTTCCCTACACCCTATT
TTACCCTATTTCCGCGCCTTTATATCCACTCCCTTTTTTTGTCCGCATAT
CCTGTTCTAACATCTCTCCTTTTCCCCCGGATTTATTGCTCCTCTTTGCA
CTCTTTTTTGCTCCTTATC
ATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATATTCATACACACACAGACACAGAC
ACACACACACACACACACACACACACACACACACCATTTAAACACAAGCT
TCATAAAATAATTGCAGCTGTGATGAAATGAAAACTATAGGAGGCCACTG
TTTTCAACTAAGCTGTTGCCTCAGATCCCAGGAGAGCAGGCTAAAAGTCA
GAATGGAGTCATTCACTCATGCTGAAGAAGTTCCATTTCAACAAGTAGAA
ACCAAGGTAGATATTCATTTGATTTATTAAAATGGGATTAGAGATTACAA
AATGCAAAATGTGCCAAGTCGGCCAATTTCATAGGTATAAGGAAGTTCTT
CCAACCTAACACTATATAAATATATATTGCAGTATCCTGTTATCATCAGG
TAATTATCTGCCCGTGATTCTGGCTCCCTGCTTTTATCTTACACACACCC
CTATTCCCTCTAATTTTTTCGCTCCCGCTCTCCCCTCACCCTCCTTTTCT
TATGTACTGACACCTCTCCAGTTCACTGTTACACTTTGCCTCCATTCTTC
CCAGTCCTCCTTCCATTTCTTCACAACCCTCTATTCTCTCCATTCTTCCA
CCTTCTTCTTTTTTTATTTCCCCCCCTCCTTCACTACCTCATACACTATT
TTCTTCCTTTATTTTTCCTTCCTTCCCTTGTCCTCATTCTATTCTCCTCC
CATCCTATCTCCGATTTCCCTATCTCTCTATCTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_a08.g1 MSMg01no397_a08.g1 CHROMAT_FILE:
MSMg01no397_a08.g1 PHD_FILE: MSMg01no397_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:18 2005
         (323 letters)



>mm_chr13_67086238_67086960
          Length = 723

 Score =  555 bits (287), Expect = e-162
 Identities = 296/299 (98%)
 Strand = Plus / Minus

                                                                       
Query: 25  acacacacacacacacacacacacacacacacacaccatttaaacacaagcttcataaaa 84
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 acacacagacacacacacacacacacacacacacaccatttaaacacaagcttcataaaa 642

                                                                       
Query: 85  taattgcagctgtgatgaaatgaaaactataggaggccactgttttcaactaagctgttg 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 taattgcagctgtgatgaaatgaaaactataggaggccactgttttcaactaagctgttg 582

                                                                       
Query: 145 cctcagatcccaggagagcaggctaaaagtcagaatggagtcattcactcatgctgaaga 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cctcagatcccaggagagcaggctaaaagtcagaatggagtcattcactcatgctgaaga 522

                                                                       
Query: 205 agttccatttcaacaagtagaaaccaaggtagatattcatttgatttattaaaatgggat 264
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 521 agttccatttcaacaagtagaaaccaaggtagatattcatttgatttaagaaaatgggat 462

                                                                      
Query: 265 tagagattacaaaatgcaaaatgtgccaagtcggccaatttcataggtataaggaagtt 323
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tagagattacaaaatgcaaaatgtgccaagtcggccaatttcataggtataaggaagtt 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)