BAC Information

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BAC

Clone NameMSMg01-397J11
Chromosome13 (Build37)
Map Location 9,539,220 - 9,539,464
singlet/doubletsinglet
Overlap geneDip2c
Upstream geneAdarb2, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719
Downstream geneLOC666986, Zmynd11, Chrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397J11.T7 (MSMg01no397_j11.b1)MSMg01-397J11.TJ (MSMg01no397_j11.g1)
ACCAG497895AG497896
length775804
length of high quality
(start - end)
245 (74 - 318)244 (76 - 319)
definitionCHROMAT_FILE: MSMg01no397_j11.b1 PHD_FILE: MSMg01no397_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:04 2005CHROMAT_FILE: MSMg01no397_j11.g1 PHD_FILE: MSMg01no397_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCATAACACCGCGGA
ATTCAGNAATTTTCCCAAAAATATCGAAAGCAAAATTCATGTCAACTGAA
TTCTAAAACATTTTGTGAAAAGCAATTACTTTTATAAAGATTGGGTTAAT
ATACTCTCAGCATACTCTGAGACATTGTTGTCAGATGAAAGCATTATCAA
AAGATTACAAAGGCTTAAAATCAAGAAAAATGCATGTAAACAGCCTGCTT
TTGAATGTACAGCATAATGCTATCTGTTCTGCTTTGTTCTTAGTGCTTAC
TCTACAACTATACGAATACTAGTTGTTCAATTTCTCTACTTAAGTTATCT
AAGTCCTATATTTTACTCAACACTTTCAAATACATATTACAGAGTTTAAG
CTCATCTAAGTAAACACCCCGGCTAGTCTAAGTTACATTTCTCACCTTTT
CGTTCTGTANAATTTTACAAAGCATTAACCCCTTCATTTCTAAGATTCTT
TAGAGTTTTTAATTTTTTTGATTTTGCAGCGGTCCGGATGGAAAAAGCCA
CTAGAAGCAAACACTGAGCTATAAAGCTCAGCCCTTTAATACTTAACACT
CTCTTAACTACTTTGAAATGAGCCTAAACCCTTCCTCTATTTGTGCCGGC
GCCCCTACCGCTTTCCCACTCTCTTTTGTCTTTCCCCAAGCACTTTTAAT
TTTTTTTTCCCCCTATCCATTATTTTATCCCCTCTACTTGTCTTCTTCCT
TCGTCTATTCCTCTTCTTCCTCCCG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTG
AGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAA
GTCAAAACAACCTGAGATTCCATCTCACACCAGTCGGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAAC
ACTCCTCCACTGCTGGTGGGATTGCAAGCTTGTATAGCTCCCCTTCTTAA
GAGGAAAATGTTCAGGTTTCTTTTTTTCTGTCTGAGGNCTGATGACTAAA
GTAGCTAGAACTCTGAACTTCAAGCTCTGTTCTACCGGCAGATAGTTACA
GTTACATTAATGACCACCACCCCCCCTAATCCGTTTTCTGGTCCCCCTTT
GCAGGAATACTTTTCCTTTCTCTCATTTACGTCCATTCTCTTTTTTTCCT
TTCCATCCCTTGCTTCTTTTCTTGCCTTTCCTTTCCCCCCTTTTCATCCT
CCCATTTCCTTACCTTTCCGCTCTCATCCCCCTCTCTTACATTTTTTTTT
CCTCTATTCTACATTCCTCCTATTATATCTTTGCTAACCACACATTTTTT
CCTCACCCTCTCTCTTTACAACTTCTTTATTTCTCCTTTCACCTCTTTAC
ATTCCTTTTCTCATCTTCTGTTGTTTCTTTTATACTCTTCTCGTTCTCTG
TCTTTCTTATTCTACATGATTTCTCTTTGCTTTTTACCACACTTCTTCTT
TCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_j11.b1 MSMg01no397_j11.b1 CHROMAT_FILE:
MSMg01no397_j11.b1 PHD_FILE: MSMg01no397_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:04 2005
         (245 letters)



>mm_chr13_9539020_9539664
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgaaagcaaaattcatgtcaactgaattctaaaacattttgtgaaaagcaattactttt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 tcgaaagcaaaattcatgtcaactgaattctaaaacattttgggaaaagcaattactttt 386

                                                                       
Query: 61  ataaagattgggttaatatactctcagcatactctgagacattgttgtcagatgaaagca 120
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 385 ataaagattgggttaatatactctcaacatactctaagacattgttgtcagatgaaagca 326

                                                                       
Query: 121 ttatcaaaagattacaaaggcttaaaatcaagaaaaatgcatgtaaacagcctgcttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatcaaaagattacaaaggcttaaaatcaagaaaaatgcatgtaaacagcctgcttttg 266

                                                                       
Query: 181 aatgtacagcataatgctatctgttctgctttgttcttagtgcttactctacaactatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 aatgtacagcataatgctatctgttctgctttgttcttagtgcttactctacaactacac 206

                
Query: 241 gaata 245
           |||||
Sbjct: 205 gaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)