Query= MSMg01no397_j15.b1 MSMg01no397_j15.b1 CHROMAT_FILE:
MSMg01no397_j15.b1 PHD_FILE: MSMg01no397_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:05 2005
(520 letters)
>mm_chr13_18590800_18591719
Length = 920
Score = 934 bits (483), Expect = 0.0
Identities = 507/515 (98%)
Strand = Plus / Minus
Query: 4 gaattcataatctctccctctctactttctctgactagaaaatgagagtgattatgcttc 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattcataatctcactctctctactttctctgactagaaaatgagagtgattatgcttc 659
Query: 64 caaaaattctatcaacttacggaaagtcttgagctgaattattctatctttctttatctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 caaaaattctatcaacttacggaaagtcttgagctgaattattctatctttctttatctg 599
Query: 124 gcattatttttagcaacctggcaaaagcccatgttggattctgtataaggaatacagtat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gcattatttttagcaacctggcaaaagcccatgttggattctgtataaggaatacagtat 539
Query: 184 cctgaagccactcgtttaataaaatgtgggcagaatcacattgggaacgctctactgaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cctgaagccactcgtttaataaaatgtgggcagaatcacattgggaacgctctactgaaa 479
Query: 244 gttatattaatggacagcagaaacgagtctgattatatatactaaactgaacaaggatgt 303
|||||||||| || ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 478 gttatattaaagggcagcagaaacgagtctgatgagatatactaaactgaacaaggatgt 419
Query: 304 atgctgagtggacacaactgaacttgtattgtggaatatctttgagacaagtgttttgtg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atgctgagtggacacaactgaacttgtattgtggaatatctttgagacaagtgttttgtg 359
Query: 364 acatgattcataggaaagaaacactgtctcattccagccttttaatttctatgatgagaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 acatgattcataggaaagaaacactgtctcattccagccttttaatttctatgatgagaa 299
Query: 424 cattgagactgatagtgtttgaatggcttgctatgtttatctacaggggacactgaatga 483
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 298 cattgagactgatagtgtttgaatggcttgctatgtttatctccaggggacactgaatga 239
Query: 484 atctgaatactgaacacactccagtgtcctgtctc 518
|||||| ||||||||||||||||||||||||||||
Sbjct: 238 atctgagtactgaacacactccagtgtcctgtctc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_j15.g1 MSMg01no397_j15.g1 CHROMAT_FILE:
MSMg01no397_j15.g1 PHD_FILE: MSMg01no397_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:05 2005
(342 letters)
>mm_chr13_18431273_18432015
Length = 743
Score = 648 bits (335), Expect = 0.0
Identities = 341/343 (99%), Gaps = 1/343 (0%)
Strand = Plus / Plus
Query: 1 aggctaaataccacaatattgaaagatttgaaaaattacctagttttatgtactatctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggctaaataccacaatattgaaagatttgaaaaattacctagttttatgtactatctta 260
Query: 61 ctcagtaaactatgctttctctattgctcatgttggaatattgcaatattgagaatgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagtaaactatgctttctctattgctcatgttggaatattgcaatattgagaatgtgg 320
Query: 121 gtcagagtgccttttaactggtatccttgggacacaatgaaatctctagttaataaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagagtgccttttaactggtatccttgggacacaatgaaatctctagttaataaaaca 380
Query: 181 tctgaggaacaagcaagttagctaatcattagctaacaattcatactttgtaagaaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgaggaacaagcaagttagctaatcattagctaacaattcatactttgtaagaaagca 440
Query: 241 tcttaaatattctagttataatatttt-ctaagaatccaaaatattattggtgataagct 299
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 tcttaaatattcaagttataatatttttctaagaatccaaaatattattggtgataagct 500
Query: 300 taaaagccaagaagaatagttccatgaagaacagaaatattac 342
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaagccaagaagaatagttccatgaagaacagaaatattac 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 743
Length adjustment: 9
Effective length of query: 333
Effective length of database: 734
Effective search space: 244422
Effective search space used: 244422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
