BAC Information

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BAC

Clone NameMSMg01-397P22
Chromosome13 (Build37)
Map Location 67,142,426 - 67,142,663
singlet/doubletsinglet
Overlap geneZfp712
Upstream geneLOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1
Downstream geneZfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397P22.T7 (MSMg01no397_p22.b1)MSMg01-397P22.TJ (MSMg01no397_p22.g1)
ACCAG498203AG498204
length782780
length of high quality
(start - end)
260 (37 - 296)233 (70 - 302)
definitionCHROMAT_FILE: MSMg01no397_p22.b1 PHD_FILE: MSMg01no397_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:36 2005CHROMAT_FILE: MSMg01no397_p22.g1 PHD_FILE: MSMg01no397_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGTTCGCTAAACGACTCACTATTTCCAGAGGATCCGCGGAATTCAC
ACTTTTCCAAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACTG
TTCTTCACATCTTAAACAACACCGAATTATTCATACTGGAAAGAAACCCT
ACAAATGTAAAGAATGCAGCAAAGCTTTTAACTGTTCTTCAAGTCTTAAC
CAACACCGTAGAATTCACACTGGGGAGAAACGCTACATATGTGAGGAATG
TGGCAAAGCCTTTAATAACTGTTCAGCCCTTACTCAGCACCAAAGAATTC
ACAGTGGATATATTTCCTATAAATGCGAAGAGTGTGGCAAAGCCTTTTAT
AATTGCTCAGCTCTTTCTCGGCACCAAAAGATTCATACTGGAGAAAAACC
TTATAAATGTGCATAGTGTGCCAAGGTTTTTATCTTCCGCTCATCCCTCT
CTTAATACCTTATATTTCCTATTGGATAGAAACCCTACTTATGCCTAGAA
TTGTGTCCAAGCCTCTAACTGCTCTTCTCACCTTTAACAACTCTGTAAGA
ATTCCCCGTGCCACAAATACCTCTTTTATGTTTAACATCGTTTTTCAGAC
TCTTACCCTGTTCTTCTTACCTTATTTACACCCCCCTACCATTCTCTGTC
CTTTATTCTAACTCTCAATCATCCCCTTTTTTTCTTTCTCCCTCTCTTTC
CTCCCCCTTTTTCTTCTCTTTCATTAATTACCCTCGCCCCTCCCAATTCC
CTCTCCTCCATCTTCTTCTACCCCCCTTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGCCAGAGAAAC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACTTCACTCTAGTCAAAATGGCTAAGATCAAAAA
CTCAGGTGACAGCAGATGCTGGCCAGGGTGTGGAGAAAGGGGAACACTCC
TCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCTTTATATTGGACTTAGTACTAAAGCAATGCTCTTAACC
AAAGCAAACTCTTTTGAAATTCATATTCTGGTACATGTTAAAAATCAGAT
TTTCGGAGTACCCTGCTAGCATCCTTCCCAAGGTTCTTATTTCCTCTTGT
ATCATGCCTGCCTGCACGCTGTCACGTTTACTCCTCGACCTCGGACTGTC
CTTCGCTTTCTCGTACTCCCGCCCCCACCTAGCTGCCGACTCCTCTTACT
ATCCCGCCCCCCGTTAATTTCATTTTTTCCGCCCTTCTTACCCCGCCTTT
TTCCCCCCCCTCCCCCTTTTCTCTTCCTTTTTTCTTTACTCCCCTCCTCC
CTCCTTCTTTTCTCTATTTTCCCCTTTCCTCACCCCTCCCCCTCACCCTC
TGTTTTCTCCCCCCTTGCCCCCCCCTCCTTCCTTCTTTCCCCCCTTCCCT
CCCTTCTCCTTCCTTCTTTCACGTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_p22.b1 MSMg01no397_p22.b1 CHROMAT_FILE:
MSMg01no397_p22.b1 PHD_FILE: MSMg01no397_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:36 2005
         (260 letters)



>mm_chr13_67142089_67142748
          Length = 660

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Minus

                                                                       
Query: 23  aaaaccctacaaatgtgaagaatgtggcaaagcctttaactgttcttcacatcttaaaca 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aaaaccctacaaatgtgaagaatgtggcaaagcctttaactgttcttcacatcttaaaca 516

                                                                       
Query: 83  acaccgaattattcatactggaaagaaaccctacaaatgtaaagaatgcagcaaagcttt 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 acaccgaattattcatactggaaagaaaccctacaaatgtaaagaatgcagcaaagcttt 456

                                                                       
Query: 143 taactgttcttcaagtcttaaccaacaccgtagaattcacactggggagaaacgctacat 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 taactgttcttcaagtcttaaccaacaccgtagaattcacactggggagaaacgctacat 396

                                                                     
Query: 203 atgtgaggaatgtggcaaagcctttaataactgttcagcccttactcagcaccaaaga 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atgtgaggaatgtggcaaagcctttaataactgttcagcccttactcagcaccaaaga 338



 Score = 78.1 bits (40), Expect = 5e-19
 Identities = 89/106 (83%), Gaps = 4/106 (3%)
 Strand = Plus / Minus

                                                                       
Query: 24  aaaccctacaaatgtgaagaatgtggcaaagcctttaactgttc-t-tcacatcttaaac 81
           ||||||||||||||  |||||||||||||||||||||||||||| | ||||  ||||| |
Sbjct: 154 aaaccctacaaatgcaaagaatgtggcaaagcctttaactgttcatctcac--cttaacc 97

                                                         
Query: 82  aacaccgaattattcatactggaaagaaaccctacaaatgtaaaga 127
           ||||  |||  ||||| | |||| ||||||| || |||||| ||||
Sbjct: 96  aacatggaagaattcacagtggagagaaaccttataaatgtgaaga 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)