BAC Information

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BAC

Clone NameMSMg01-398B04
Chromosome13 (Build37)
Map Location 53,999,254 - 53,999,688
singlet/doubletsinglet
Overlap genenone
Upstream geneAuh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760
Downstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398B04.T7 (MSMg01no398_b04.b1)MSMg01-398B04.TJ (MSMg01no398_b04.g1)
ACCAG498263AG498264
length851771
length of high quality
(start - end)
361 (44 - 404)432 (74 - 505)
definitionCHROMAT_FILE: MSMg01no398_b04.b1 PHD_FILE: MSMg01no398_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:42 2005CHROMAT_FILE: MSMg01no398_b04.g1 PHD_FILE: MSMg01no398_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCCGCGGAA
TTCACATTGCTTCATCATCTGAACTCGCCTGTTTAAAAAAAAAAAACTTA
ATTGGGTGGTTTCCTAAAACTGCAGGGGCTGTATAAATTATTCAAGAATT
CATCACCAGAGAGGCCAGAGCAGGGACACATGGTGGCAGGCAGACAGACA
TGGTCCTGGAGAAGGAGCTTGAGAGTTCTATATCTGGATCCACAAGCAGC
AGGAAGAGAGAGACACTGGGCCTGGCTTGGGCTTTTGAAACCTCAAAACC
TACCCCCACCCCCCAGTGACACACTTCTTCCAACAAGGCCACACTTCCTG
ATAGTGCCTCCGCCTAGTGATCAAATCTATGAGCCTATGATTGGGGGGGG
GGGGAATTTTTCCTTCCCCTTTTTTTTTCCCTCCTCTTTCTTCCATCTCT
TTCCCCTCTCCTCTTCTTCTTTCCTCTCTCTTCATTATTTCATCTTTTCC
CTTTTCTCTTCCCTCCCCCTCATTCTTCTTCTCTCTTCCTCTTTTTTTTA
TTTTATTCTTTCTTCTCTTCCTCTTCCCCCCTGATTCTCTCCCATTCTTT
TTTCCCTTTCCTCACCTCTCCTCCTTTCTCTCCTCCATCCTCCCTTTTAT
TTCTCCCCTTTCTTCCCTCTCACCCTCCCTTCCCCTTTACCTCTTGCCTC
CTCCCTTTTGCCTCTCCTTCTTTCCCCCCCCTCTACTTCTACCTCCTCTC
CTTTTTCTCTTCTTTCCCCCCCTTCTTCTTTCCCTATTTCCTCCTTTCCT
CCCCCTTTTTCTCTCTATTTTTTATTCTTTTTTTCCCCTCTCCCCCCCCC
C
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTCCCAGGAGCTCAGCCAACCGGTC
AAATACACATCTATCCGAGACTCCTGGAGAAAGTTCCTATAGGTCGGGTA
GACTTGTACTAGAAATCAGAGAGAGATAAAAAGATACTGTATCTGTCATG
TGGGGCTCACCATCTGTAGCCAGGGTTCTTAGGACCAAAGCTTTAATTTC
AGTGGAATAAAGGGTATAGGAGGAGCACTACGGCAACAGTGTAACTATTG
ACTCCTGGAGGAGAGACAATGGCAACAACGTTACTATTGACTCTTCCAGC
TTAGAGGAGGACAAGCCAGTAGAGCAAATAGAAGAGACTGACCGTGATTT
TGATGCTCGTTAAGTTTGGGTTTGGTCTCCGTGGGAAGACACTGGCTTTC
AGCACCAGCATCTCCGCTTAGTCACATAGCTTCACGAAGAGGTTCTTTGC
TAGCTGAGGCAGACTGGTTTGCGGGGGGCGCCTCAGCTATCCTCTTCCCC
ATTTTCTCTCGACTTGTTCCTGGTGTTGTGTTTCCGGGTTTACTTCTTCC
CTGGGACTCACCTCTTTCCCTCTGGTCTCGCTCTACGACATGTTTCTCTC
CTTTTTCTTTTTATTTTGTTATTTTTTTGTTTCCTCCATTGGTCCTTCCT
ACTTCTATCCTTCTGTTTTTCTTCCCTTTCCTCCCCTCCTTTTCTCGCCC
CCCTTCTCTTCTCCCCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_b04.g1 MSMg01no398_b04.g1 CHROMAT_FILE:
MSMg01no398_b04.g1 PHD_FILE: MSMg01no398_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:42 2005
         (432 letters)



>mm_chr13_53999054_53999888
          Length = 835

 Score =  810 bits (419), Expect = 0.0
 Identities = 430/435 (98%), Gaps = 3/435 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctcccaggagctcagccaaccggtcaaatacacatctatccgagactcctggagaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atctcccaggagctcagccaaccggtcaaatacacatctatccgagactcctggagaaag 576

                                                                       
Query: 61  ttcctataggtcgggtagacttgtactagaaatcagagagagataaaaagatactgtatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttcctataggtcgggtagacttgtactagaaatcagagagagataaaaagatactgtatc 516

                                                                       
Query: 121 tgtcatgtggggctcaccatctgtagccagggttcttaggaccaaagctttaatttcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgtcatgtggggctcaccatctgtagccagggttcttaggaccaaagctttaatttcagt 456

                                                                       
Query: 181 ggaataaagggtataggaggagcactacggcaacagtgtaactattgactcctggaggag 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 455 ggaataaagggtataggaggagcactatggcaacagtgtaactattgactcctggaggag 396

                                                                       
Query: 241 agacaatggcaacaacgttactattgac---tcttccagcttagaggaggacaagccagt 297
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 395 agacaatggcaacaacgttactattgactcttcttccagcttagaggaggacaagccagt 336

                                                                       
Query: 298 agagcaaatagaagagactgaccgtgattttgatgctcgttaagtttgggtttggtctcc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agagcaaatagaagagactgaccgtgattttgatgctcgttaagtttgggtttggtctcc 276

                                                                       
Query: 358 gtgggaagacactggctttcagcaccagcatctccgcttagtcacatagcttcacgaaga 417
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 275 gtgggaagacactggctttcagcaccagcatctctgcttagtcacatagcttcacgaaga 216

                          
Query: 418 ggttctttgctagct 432
           |||||||||||||||
Sbjct: 215 ggttctttgctagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 835
Length adjustment: 9
Effective length of query: 423
Effective length of database: 826
Effective search space:   349398
Effective search space used:   349398
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)