BAC Information

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BAC

Clone NameMSMg01-399F23
Chromosome13 (Build37)
Map Location 7,087,634 - 7,087,873
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
Downstream geneLOC667611, EG623516, LOC791083
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399F23.T7 (MSMg01no399_f23.b1)MSMg01-399F23.TJ (MSMg01no399_f23.g1)
ACCAG499251AG499252
length734752
length of high quality
(start - end)
242 (71 - 312)519 (79 - 597)
definitionCHROMAT_FILE: MSMg01no399_f23.b1 PHD_FILE: MSMg01no399_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:22 2005CHROMAT_FILE: MSMg01no399_f23.g1 PHD_FILE: MSMg01no399_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATACCTACTCGCCGCGGAA
TTATAAAATTGCAGCACCTTACTTTTACTACTTTATTTTCTTTTTACTTC
TGATGTATCTCTCTAGCCCATCATCAACTGTCAGAGTTGTCTCTTTCCTT
AAAACAAGCCCACTAATACTCTCTTCCTTTTTTTTTTTCCTCTATATACA
TGAACACATGGAATAATGAGGCTTTGTTGCCACAGAAATCTACTTATTCA
AACAGTTCTCATTTCTCAGCTTAAGGAAAAGAACATAGATGTGTCAGGGG
GGAAATTGAATTTAATGCTTGGAAGCATATTGTCTGATTATTAGAACCCA
GAGCTTGTAAGACTGCCTTTCTTACTACAAGTTGTGAGACAGTCTTGAAG
AATTTTCATAGCTCTTCCAGGCAGAATTCTTATCTCGCCTGAAGTCTGAA
ATTGTGAATTGTTCTGAAATGTAATGTCATTGACTGCATATTGCTTCATG
AGAGTTCCTTAAGAAATATCACTGGGAATCAGAGGGGCCATGAGCTCTGA
CTAATTGTAACTCTGACACCATCTTTCAGGAACCTGAACAACTTTATAAA
GGGGCCTCTGACATATACAGTAGACCATTAAGGAACTTTCCATGTCTTTT
CTCTCATGTAGAAAATGGAAGCTTAAAATACCTGCATATTATTTAATGTA
CCTATTCTAACAGCAATTGTGTATGTATAGGCTG
TACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGAT
AAAAGCAATCTACAGCAAACCAGGAGCCAACATCAAAGTAAATGGAGAGA
AGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTT
TCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTTG
ACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAA
TATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAAT
TCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGG
ATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACTCAAAGAATA
AACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGCCACA
AATAATATAAAATATCTCGGAGTGACTCTAACTAAGGAAGTGAAAGATCT
GTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCA
GAAGATGGAAAGATCTCCCATGCTCATAGATTGGCAGGATCAACATTGTA
AAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCAT
CAAAATTCCAACTCAATTTCTTCAAGGAATTACAAGGAGGCAATTTGTAA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_f23.b1 MSMg01no399_f23.b1 CHROMAT_FILE:
MSMg01no399_f23.b1 PHD_FILE: MSMg01no399_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:22 2005
         (242 letters)



>mm_chr13_7087434_7088073
          Length = 640

 Score =  408 bits (211), Expect = e-118
 Identities = 234/245 (95%), Gaps = 8/245 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttttactactttattttctttttacttctgatgtatctctc---tagcccatcatcaa 57
           |||||||||||||||||||||||||||||||||||||||||||   |||   ||||||||
Sbjct: 201 acttttactactttattttctttttacttctgatgtatctctccagtag---atcatcaa 257

                                                                       
Query: 58  ctgtcagagttgtctctttccttaaaacaagcccactaatactctcttcctttttttttt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctgtcagagttgtctctttccttaaaacaagcccactaatactctcttcctttttttttt 317

                                                                       
Query: 118 tcctctatatacatgaacacatggaataatgaggctttgttgccacagaaatctacttat 177
             ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 318 --ctctatatatatgaacacatggaataatgaggctttgttgtcacagaaatctacttaa 375

                                                                       
Query: 178 tcaaacagttctcatttctcagcttaaggaaaagaacatagatgtgtcaggggggaaatt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcaaacagttctcatttctcagcttaaggaaaagaacatagatgtgtcaggggggaaatt 435

                
Query: 238 gaatt 242
           |||||
Sbjct: 436 gaatt 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 640
Length adjustment: 9
Effective length of query: 233
Effective length of database: 631
Effective search space:   147023
Effective search space used:   147023
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)