BAC Information

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BAC

Clone NameMSMg01-399J21
Chromosome13 (Build37)
Map Location 60,360,241 - 60,534,434
singlet/doubletdoublet
Overlap genenone
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399J21.T7 (MSMg01no399_j21.b1)MSMg01-399J21.TJ (MSMg01no399_j21.g1)
ACCAG499438AG499439
length813744
length of high quality
(start - end)
115 (113 - 227)326 (76 - 401)
definitionCHROMAT_FILE: MSMg01no399_j21.b1 PHD_FILE: MSMg01no399_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:41 2005CHROMAT_FILE: MSMg01no399_j21.g1 PHD_FILE: MSMg01no399_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,360,241 - 60,360,353)(60,534,109 - 60,534,434)
sequence
XXXXXXXXXXXXXXXXXXXCTATTCGTATCGGGCCGCGGAATTCCCAGCT
GGCGTGCACCCTTGGNTCTAAACAGGTACCTTATTCATCTCCCACTGTGT
GTGTCTGCCCACTGTTGGACACCCGTGAACTCTGCCTGGCGTTCATGAGT
TCAAGATTATTGTATGTTAAGGATATAGGTGATATGATTGAAGGGGTAAT
GGGAAAAATATGGGGAGGCATCTTTTATGGGGAAGTTTTTTTTCCTCTCC
CCCCCCCACTTTTCTTCTCGTCTTTTTCTCCCCCCAAACCACGCCAAATT
TCGCTAGTTTCGGGCCGCCCCCCCGCGCCAGCAAGCCAGATTTTTTTCTC
CCCCCCCCCCTTTTTTTATTTCTTTCTTCTCTCCTCTTCTTTTTCCTTTC
CCCCCTACATACATTTTACCATACTTTCCTCTTTCTCTTTCCTCCTTTTT
CTCCTCCCCCCCTCTCCTTTTTCTTTTTTTACGCCGCCATCTCCCCTTCC
CCTTTTGTGCCGTCCTCTCCCCTTTCTTTCTCTTTTTTTAACACACCCAG
TTTCTCTCTTCCTCCCCTCCCCCTTTTTTTTTCTTATTTTTTTTTGCCTT
ATATCTATCCTCCTTCCCTTATTTTTCTTTTCCCTCCGCCCTTCTCTCTC
CCCCCTTCTCTTTATTCTGACTTTCATATAAATCATATCTCTTTTTTTTT
TTTTTTATTCCCTCTTTCCCCCTTTTACTCCCCTTTCTTCCCCCCTCACC
CTTTTTCTCTCTTTTCTTTCTCCTCGTCCCCACCTTCTCTTACTCTCTTT
TCTTTTCTTTTCT
TTCGAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTCTGAGAGAAAACAGCCATGTT
TCAGTTGTGCAGGTGACAAGAGACTGAAAAATTAGGAAGAGATTTTATCT
GGGTAGAAAGAATCTATTACAGAACTTTTGATGCAGACTTCCTGTCTCCC
CTTTCTCTTCTGCACCATGCAGATGTTTTATGAACTCTATTTGCAGAGAT
GAAATTGATGTCCAGAAAAACGAACTAAATTCATTTTTGTCTTAGTCAGG
GTTTCTATTCCTGCACAAACATCTTGACCAAGAAGCAAGTTGGGGAAGAA
AAGGTTTATTCAGCTTACACTTCCATACTGCTGCTCATCACCAAAGGAAG
TCAGAACTGGAACTCAACCCCGTCTGGAAGTAGGAGCTGATGCAGAGGTC
ATGGAGGGATGTTACTTCCTGGCTTGTTTCCCCTGGCTTGCTCAGCTTGC
TTTCTTATAGAACCACCAGCCCTGAGATGACACCACTCACTATGGGCTGG
TCCCTCCCCCATTGATCACTAACTGAATATATGCCTTACAGCTGGACCTC
GTGCAGGTTTTTCCTCCAGAGAGGCTCCTTTCTCTGTGATAACTCTAGCT
TGTGTCTTGTTGATTCACTAACCTCGCCTGTTCTTCCAGTTAAAATATAG
CTAGTCCTTGTGTTTGTTTCTTGGTACTAGGTACTCTTCTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_j21.b1 MSMg01no399_j21.b1 CHROMAT_FILE:
MSMg01no399_j21.b1 PHD_FILE: MSMg01no399_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:41 2005
         (115 letters)



>mm_chr13_60360041_60360555
          Length = 515

 Score =  219 bits (113), Expect = 6e-62
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttggacacccgtgaactctgcctggcgttcatgagttcaagattattgtatgttaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttggacacccgtgaactctgcctggcgttcatgagttcaagattattgtatgttaagg 260

                                                                
Query: 61  atataggtgatatgattgaaggggtaatgggaaaaatatggggaggcatcttt 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atataggtgatatgattgaaggggtaatgggaaaaatatggggaggcatcttt 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no399_j21.g1 MSMg01no399_j21.g1 CHROMAT_FILE:
MSMg01no399_j21.g1 PHD_FILE: MSMg01no399_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:41 2005
         (326 letters)



>mm_chr13_60534023_60534748
          Length = 726

 Score =  623 bits (322), Expect = 0.0
 Identities = 325/326 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttctgagagaaaacagccatgtttcagttgtgcaggtgacaagagactgaaaaattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atttctgagagaaaacagccatgtttcagttgtgcaggtgacaagagactgaaaaattag 353

                                                                       
Query: 61  gaagagattttatctgggtagaaagaatctattacagaacttttgatgcagacttcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaagagattttatctgggtagaaagaatctattacagaacttttgatgcagacttcctgt 293

                                                                       
Query: 121 ctcccctttctcttctgcaccatgcagatgttttatgaactctatttgcagagatgaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctcccctttctcttctgcaccatgcagatgttttatgaactctatttgcagagatgaaat 233

                                                                       
Query: 181 tgatgtccagaaaaacgaactaaattcatttttgtcttagtcagggtttctattcctgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tgatgtccagaaaaacgaactaaattcatttttgtcttagtcagggtttctattcctgca 173

                                                                       
Query: 241 caaacatcttgaccaagaagcaagttggggaagaaaaggtttattcagcttacacttcca 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 caaacatcatgaccaagaagcaagttggggaagaaaaggtttattcagcttacacttcca 113

                                     
Query: 301 tactgctgctcatcaccaaaggaagt 326
           ||||||||||||||||||||||||||
Sbjct: 112 tactgctgctcatcaccaaaggaagt 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)