BAC Information

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BAC

Clone NameMSMg01-399K19
Chromosome13 (Build37)
Map Location 102,547,733 - 102,717,452
singlet/doubletdoublet
Overlap genenone
Upstream geneCcnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
Downstream geneCd180, Mast4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399K19.T7 (MSMg01no399_k19.b1)MSMg01-399K19.TJ (MSMg01no399_k19.g1)
ACCAG499481AG499482
length512548
length of high quality
(start - end)
244 (80 - 323)115 (84 - 198)
definitionCHROMAT_FILE: MSMg01no399_k19.b1 PHD_FILE: MSMg01no399_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:45 2005CHROMAT_FILE: MSMg01no399_k19.g1 PHD_FILE: MSMg01no399_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,547,733 - 102,547,976)(102,717,339 - 102,717,452)
sequence
TCCTCCCTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAG
AACCGCGGAATTCCAGAAGCTTCTCAAGGCATTTTCTCCTCTTTTTAATC
TGAAAATGAGCTTGCATTAGGAAGAAACAGGGAGGGAGAACACGATGAAG
AGGGAGCTAATAAATTACGTTCCTTGGTGATTCAGCTAATTGGAAATTTA
GCCCAGGGTTGATTATATTCCACACCCAAGCCTGGAGCGCTGGTACACAC
TGCCAGGGTGCTGCTACAGCTGTCAGGGTAAAAGGATTTGCTTAAATATG
CTCTCATTGGCACTGCCAGCATAATAACCATGAGCATAGTCACACAGATA
AATAATGAGCCCTTTATCAAAGAAGCTGTGTTGGACAATTTCTCCACTCA
GAGAATTTGCTAAAAGAAACCCCAGTCCCCGCTTCCCTCCATTGGGATGG
GTCCCCAGAAACTGTTGCCACCCACTTGACCCAAACCCTAAGTCCCGGTA
GTGCCTCATTGC
TTTTCCCCTCGATGAAGCGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATGACAATGGAAAT
TAACCAGGAGGAAGGACTAGGTTTAAAGAAGATATGTAGATTTCAGGCTG
AGTGTGTGCTAAAAATAAAAATATGGATTCAAAAAAAGGAAGGAACATAA
AAAGGAGAGAGAGATCTCGAGGCAGCAGACACACACACACATGAAGAGAG
ACTCAGAGACACAGATAGAGACAGAGAGAGAGACAGAGAAACAGGCACAC
ACAGAGGGGGTACAGGAAATGTTAAATGGCTTCTATTCGTGAGTTGACCA
GAGCCATGGCAGCAATGGGAGCAGAAGCCTGTCACACATGGCCTGGTGGC
TACTGCCAACTTCACTGCGGTCTCATTTGAGGCTTGCCCATACTACCTTG
TTATTTCATTGGTTAACCTCTCGTTCCGGTGGCTAACAATTTTTTTGGTC
TTTTTACGTAACTCCCATCGCTTTCCCTTTTTAACCCCTTGCCCAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_k19.b1 MSMg01no399_k19.b1 CHROMAT_FILE:
MSMg01no399_k19.b1 PHD_FILE: MSMg01no399_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:45 2005
         (244 letters)



>mm_chr13_102547533_102548176
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattttctcctctttttaatctgaaaatgagcttgcattaggaagaaacagggagggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattttctcctctttttaatctgaaaatgagcttgcattaggaagaaacagggagggaga 260

                                                                       
Query: 61  acacgatgaagagggagctaataaattacgttccttggtgattcagctaattggaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacgatgaagagggagctaataaattacgttccttggtgattcagctaattggaaattt 320

                                                                       
Query: 121 agcccagggttgattatattccacacccaagcctggagcgctggtacacactgccagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcccagggttgattatattccacacccaagcctggagcgctggtacacactgccagggt 380

                                                                       
Query: 181 gctgctacagctgtcagggtaaaaggatttgcttaaatatgctctcattggcactgccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgctacagctgtcagggtaaaaggatttgcttaaatatgctctcattggcactgccag 440

               
Query: 241 cata 244
           ||||
Sbjct: 441 cata 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no399_k19.g1 MSMg01no399_k19.g1 CHROMAT_FILE:
MSMg01no399_k19.g1 PHD_FILE: MSMg01no399_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:45 2005
         (115 letters)



>mm_chr13_102717139_102717653
          Length = 515

 Score =  197 bits (102), Expect = 1e-55
 Identities = 111/114 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatgacaatggaaattaaccaggaggaaggactaggtttaaagaagatatgtagattt 60
           ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 314 tttatgacaatgggaattaatcaggaggaaggaataggtttaaagaagatatgtagattt 255

                                                                 
Query: 61  caggctgagtgtgtgctaaaaataaaaatatggattcaaaaaaaggaaggaaca 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caggctgagtgtgtgctaaaaataaaaatatggattcaaaaaaaggaaggaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)