BAC Information

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BAC

Clone NameMSMg01-400F14
Chromosome13 (Build37)
Map Location 76,745,066 - 76,967,938
singlet/doubletdoublet
Overlap geneMctp1, LOC666603
Upstream geneLOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneEG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400F14.T7 (MSMg01no400_f14.b1)MSMg01-400F14.TJ (MSMg01no400_f14.g1)
ACCAG499993AG499994
length788811
length of high quality
(start - end)		456 (70 - 525)478 (76 - 553)
definitionCHROMAT_FILE: MSMg01no400_f14.b1 PHD_FILE: MSMg01no400_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:38 2005CHROMAT_FILE: MSMg01no400_f14.g1 PHD_FILE: MSMg01no400_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,967,483 - 76,967,938)(76,745,066 - 76,745,543)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTACAATTGCCATGGGGAGGAGAGAGCTGTAAGAACTGAAAGCATA
CATTCACTTTTATGGCAACACTAAAAACCCGATTGTTTCTCTAATTAAGG
CCTTCCTGTAAGCCCTCATACCATTGTCATCTTTTACAAAACTGTCAGCT
CAAGGAAGCATAAGGTGCTTATTTCCCAACAATCACAAAACAAAATAAAG
AATTTCAGAAGACAGACTCCACTGAACAAGCAGCAACAGCATGAGTCCTG
GCAGGCTGACTGGAAGAGCCTTTTGAGATTTTCTGCCACTGCCATTGGTC
TTGCCATCAGTTCTTATTAAATAATCCACGTAAAGGGTACAGGATGAACC
TTGTAAGGAGGCTATTTGGGTCAACTACAGTATCATATGACTTTTTAAAA
ACTAGAAACCAAAAAAACAACTTTGAAGTAGGTCACATCCCTTTCTGCTC
GACTCACATAGTANAGTCTTACCAGCCAGTGTTTCCACTGTCAGAGATGG
TCCTGTTTTGACAAACTTAGAGTATTACAAAGTTTCAGTGAGGATGGTCA
GGGCTGTTTCAAAATCCCTATTTTCTACCAAAAACTTTTTTTGGCTCTCC
CATTGGGATCTGGAATTGGACAAAATGGCCAATTTTCTTTATAAAGGGCC
AAAAAAATAATAATATTGTTGAAAAGCCTTGGTGTCCTCAAAACTCACAA
AAATATTCCTGTGTTCAACCCCGTATTACCCCCCTCCG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGCTTGGAAAAGTGAAGTCTGAT
GTTTTAAGTATCTGAAAACACTTGGATATGATAGAGACAAGGCTCAAGTG
CACATGTGTTATGTTATATCTCAAATCCAGGGCACTACAGAACTATGTTA
CTTAGAAATACATAGAGGTTCAGTAGAGCATCACTTGGAAAATGCACTTT
TAGTCAGATTTTCTAGGCTCAAACACAAACATAACTTTTTATTTAGCCCG
AACTTTTTATTTATTCTTCTTATCTTTGTAGACTCATACTTACAAAGATT
AAATCAGGCAGTATTTTAGAAATTTTGGAAAGTGCCTGGCATATACTATT
CAATAAATTGTTACTACTATGAACTATTTTTCAATATTCAATACTTCTGG
AGTTATTAAAGTCTTTTACATCAATGAATATATAAACAAATGATTAAGCA
CTTATAAATATGTTACAGTAAATAAAAGTTAATAATAATATTGTTTAATT
CCAAAGTAGAATTACAAATGGNTTCAGTAAATGAAGTTAAAAATATTAAC
AAAATATGAACATTCCCTTGTAAATTTAATTCTTTCAAACCACAAAGAAA
AAACCCCCCCCCCCCTTACCCATAAACTTCCTGGATCCGGGGGGAGAACC
ACCTCTTTTAAAAATATTCCCAAAGAAGCCAACCCCTATCCGGCTGTGGT
TTAAGGGGTGGTTGGTGTTTCTCCCTCGGAACCAAACATACTCAGGTGGG
GGCCACACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_f14.b1 MSMg01no400_f14.b1 CHROMAT_FILE:
MSMg01no400_f14.b1 PHD_FILE: MSMg01no400_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:38 2005
         (456 letters)



>mm_chr13_76967283_76968138
          Length = 856

 Score =  876 bits (453), Expect = 0.0
 Identities = 455/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaggagagagctgtaagaactgaaagcatacattcacttttatggcaacactaaaaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ggaggagagagctgtaagaactgaaagcatacattcacttttatggcaacactaaaaacc 597

                                                                       
Query: 61  cgattgtttctctaattaaggccttcctgtaagccctcataccattgtcatcttttacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cgattgtttctctaattaaggccttcctgtaagccctcataccattgtcatcttttacaa 537

                                                                       
Query: 121 aactgtcagctcaaggaagcataaggtgcttatttcccaacaatcacaaaacaaaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aactgtcagctcaaggaagcataaggtgcttatttcccaacaatcacaaaacaaaataaa 477

                                                                       
Query: 181 gaatttcagaagacagactccactgaacaagcagcaacagcatgagtcctggcaggctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaatttcagaagacagactccactgaacaagcagcaacagcatgagtcctggcaggctga 417

                                                                       
Query: 241 ctggaagagccttttgagattttctgccactgccattggtcttgccatcagttcttatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctggaagagccttttgagattttctgccactgccattggtcttgccatcagttcttatta 357

                                                                       
Query: 301 aataatccacgtaaagggtacaggatgaaccttgtaaggaggctatttgggtcaactaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aataatccacgtaaagggtacaggatgaaccttgtaaggaggctatttgggtcaactaca 297

                                                                       
Query: 361 gtatcatatgactttttaaaaactagaaaccaaaaaaacaactttgaagtaggtcacatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtatcatatgactttttaaaaactagaaaccaaaaaaacaactttgaagtaggtcacatc 237

                                               
Query: 421 cctttctgctcgactcacatagtanagtcttaccag 456
           |||||||||||||||||||||||| |||||||||||
Sbjct: 236 cctttctgctcgactcacatagtaaagtcttaccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no400_f14.g1 MSMg01no400_f14.g1 CHROMAT_FILE:
MSMg01no400_f14.g1 PHD_FILE: MSMg01no400_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:38 2005
         (478 letters)



>mm_chr13_76744866_76745743
          Length = 878

 Score =  893 bits (462), Expect = 0.0
 Identities = 474/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagcttggaaaagtgaagtctgatgttttaagtatctgaaaacacttggatatgataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 acagcttggaaaagtgaagtctgatgttttaagtatctgaaaacacttggatacgataga 260

                                                                       
Query: 61  gacaaggctcaagtgcacatgtgttatgttatatctcaaatccagggcactacagaacta 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaaggctcaaatgcacatgtgttatgttatatctcaaatccagggcactacagaacta 320

                                                                       
Query: 121 tgttacttagaaatacatagaggttcagtagagcatcacttggaaaatgcacttttagtc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttacttaaaaatacatagaggttcagtagagcatcacttggaaaatgcacttttagtc 380

                                                                       
Query: 181 agattttctaggctcaaacacaaacataactttttatttagcccgaactttttatttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattttctaggctcaaacacaaacataactttttatttagcccgaactttttatttatt 440

                                                                       
Query: 241 cttcttatctttgtagactcatacttacaaagattaaatcaggcagtattttagaaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcttatctttgtagactcatacttacaaagattaaatcaggcagtattttagaaattt 500

                                                                       
Query: 301 tggaaagtgcctggcatatactattcaataaattgttactactatgaactatttttcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaaagtgcctggcatatactattcaataaattgttactactatgaactatttttcaat 560

                                                                       
Query: 361 attcaatacttctggagttattaaagtcttttacatcaatgaatatataaacaaatgatt 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 attcaatacttctggagttattaaagtcttttacatcgatgaatatataaacaaatgatt 620

                                                                     
Query: 421 aagcacttataaatatgttacagtaaataaaagttaataataatattgtttaattcca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcacttataaatatgttacagtaaataaaagttaataataatattgtttaattcca 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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