Query= MSMg01no401_b22.b1 MSMg01no401_b22.b1 CHROMAT_FILE:
MSMg01no401_b22.b1 PHD_FILE: MSMg01no401_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:40 2005
(468 letters)
>mm_chr13_28536374_28537241
Length = 868
Score = 851 bits (440), Expect = 0.0
Identities = 461/468 (98%)
Strand = Plus / Minus
Query: 1 aaagatgctttgctgtgagtacctctcaaaaataatttttctataaataactggttggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaagatgctttgctgtgagtacctctcaaaaataatttttctataaataactggttggaa 609
Query: 61 agataacagagttcctaaatgctaatcaagatggtctctgggaaaaacatgagagacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agataacagagttcctaaatgctaatcaagatggtctctgggaaaaacatgagagacaga 549
Query: 121 actgaaaaagtagctgtaatttgctaatcagaaacataatcagagtttatcccattttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 actgaaaaagtagctgtaatttgctaatcagaaacataatcagagtttatcccattttga 489
Query: 181 aaaagactataaatataagcagtgactaagaaggtatagaaatgagtctcagggcaatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaaagactataaatataagcagtgactaagaaggtatagaaatgagtctcagggcaatgt 429
Query: 241 tattggtgtctatgtgatgacagtcttgtgcagaggtgctaggttcctcgcatacaaact 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tattggtgcccatgtgatgacagtcttgtgcagaggtgctaggttcctcgcatacaaact 369
Query: 301 tgagctttaccaaaataattcttcagcaatctcttaaatcagcaggacttttgagaggtg 360
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 368 tgagctttaccaaaataattcttcagcaatctcttaaatcagtaggactttcgagaggtg 309
Query: 361 ttgcatactgctgcattaaaagatgtattcatcatttatttactgtttatgggcagtttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 308 ttgcatactgctgcattaaaagatgtattcatcatttatttactgtttatgggtggtttg 249
Query: 421 tctacatgcatatctgtatacaatatggatgcccagtgcctttggaga 468
||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 248 tctacatgcatgtctgtatacaatatggatgcccagtgcctttggaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_b22.g1 MSMg01no401_b22.g1 CHROMAT_FILE:
MSMg01no401_b22.g1 PHD_FILE: MSMg01no401_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:40 2005
(507 letters)
>mm_chr13_28308330_28309235
Length = 906
Score = 890 bits (460), Expect = 0.0
Identities = 495/510 (97%), Gaps = 7/510 (1%)
Strand = Plus / Plus
Query: 1 agcagtgaaactgtattttatttttagatagaaccattttttactgcttcttttactaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagtgaaactgtattttatttttagatagaaccattttttactgcttcttttactaat 260
Query: 61 cctcaggaacaggaattcaaatacaaaagtcacatgttaaacaatttcacatatatcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcaggaacaggaattcaaatacaaaagtcacatgttaaacaatttcacatatatcaat 320
Query: 121 tttcagaatgtctaaaaccataaacacagaagcaaatccaactgccagaggagcattgaa 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcagaatgcctaaaaccataaacacagaagcaaatccaactgccagaggagcattgaa 380
Query: 181 atggggcgcttaaacttagtaaatatggagggtttggggtgagggcacaaaagtattttg 240
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggggcacttaaacttaataaatatggagggtttggggtgagggcacaaaagtattttg 440
Query: 241 aaacttgttttat---ctataaatatgctaagtgtggctgatgtgcatatggaaatggtt 297
||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacttg----aaaaacaataaatatgctaagtgtggctgatgtgcatatggaaatggtt 496
Query: 298 aattaatgtaatgtgaattttctattggttggaacaaaaccatgacttaactaacacttt 357
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 497 aattaatgtaatgtgaattttctattggttggaacaaaaccatgccttaactaacacttt 556
Query: 358 ttcaaataatcaatttgtctggacctcaggaaattaattttttaagtatcagtttcccca 417
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 557 ttcaaataatcaatttgtctggacctcagaaaattaattttttaagtatcagtttcccca 616
Query: 418 acatgaatataatataatttatgctaagttaaacttacctatagcacctagcacaataca 477
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 617 acatgaatataatataatttatgctaagttaaacttacctatagtacctagcacaataca 676
Query: 478 tgaataaaagactctaagtggaaattattg 507
||||||||||||||||||||||||||||||
Sbjct: 677 tgaataaaagactctaagtggaaattattg 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space: 445312
Effective search space used: 445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
