BAC Information

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BAC

Clone NameMSMg01-401P12
Chromosome13 (Build37)
Map Location 80,500,617 - 80,500,902
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401P12.T7 (MSMg01no401_p12.b1)MSMg01-401P12.TJ (MSMg01no401_p12.g1)
ACCAG501228AG501229
length1,996753
length of high quality
(start - end)
---285 (376 - 660)
definitionCHROMAT_FILE: MSMg01no401_p12.b1 PHD_FILE: MSMg01no401_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:43 2005CHROMAT_FILE: MSMg01no401_p12.g1 PHD_FILE: MSMg01no401_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGTGAGCGGANTATAATGGNATACTACTTAGATTATNCNGCGTTGTCGC
GGGCGGCNCNTNACTCTCCACTCATCACTCTTGGCCGCTCGTTGTGTGCT
GATCAGCTCNATCGCTCTCTCTACTCCTCGACACGTAGTAGTCGAACATC
GTAGTTACATGTCNCGTGAGATCAGAGGGCGGTAGTCTATCCACCACTAG
CATATCTTATCCTTCTCACATCTCTCCCTTGTTAGCGTATCGATCGNATG
GTGCGCTTGTGTGCGCGNCTGCATATTCGCTTCCTCGCCCTGTAGATCTG
TNCGTCTGCTTGTGNGTGCCATGTGTGACCACGCTCTGATGCTTTGACGA
TTTAGCAGCTGTCGCCGAATGGTGCGACGCGGTCANAANGTGCTACTTCA
TAATACCAACAATAATTCATTCATCTTCTCGCGCCATTTATGTATGCCAT
GCTAGATCACACCTGACGTGCGCTCCAACGCAGAAGAACAGCGCGTGGAG
GTGTGGTGACTGATGGTGAGTGTGACGAAGTGATACTTGTAATGACAATC
TATGTNAATGAGACACACATGAGCATCGATATGTGATAAACATGATGAGA
ATATATTCACAATGAGAGAGGCAGGAGTACGTCATGTGTATTAAACGCAA
TAGTCGAGTGGAGGAGCGCAGAGACTACTGCGAGTGTCGATCGCCGGAGC
ACGCGGAGCTACGCTGTGCGGCACGCGACGTGGAGTCGCGACGTGGCGTA
CGCGCGAGNCGCTTGNTGAGTCGCATCAGCGATACGTACACTATCTTCGC
GAACTACGCACTATCACTACACACACATCCACATCTCGCTCAATCTTAAT
CTATATATAATAACTGCGCAGATATACATGATCCACGATTGATATTGATN
TNTCGTCAGCCGAGTAGTTATTGAGAGTGCTCGCTAGTACGACGCATATG
ATCAGCGATTGTGCGCGCGTAACTTCGTCACTACCACGTACTCGCTCATT
TATAGCGCCACGCTGTCACTGCTTNTNACTGATATGTCGTACATACGACG
ACTAATATATCGACGATCGCTACCTCATTATGTCTCGTTGCGATTTGCTC
TCTATTGCCGNGCCATTGGTNTCGATGTCTCTGTTGTCGTCTGTTTCATT
AGCGCAGCNGNCTGTCTCGGATACCTCCGNGTACCTGACANTCGAGTATG
TGATGTACGCACGATACGCGCACGCCCTCGACGCGCGCTACTGTAGTAGT
GCGTCTATGTGTGNTAGTNATGACTCATACCCGTGCTTCCNGTGTCTCAG
GCTGTGGCTTATGGTCGCGACGCGACCGACTATAATGTGCTTATNGACCG
ACGCTGTGACTACTGCTGTACATTGCAGTGCTGCGTACTATATTACTGAC
CGCAGTNCAGCACTCGTNTATATGACGAGGGTNTGGTCNATCACNTGAGT
CGAAACACTGCTGATCGTCTGCCACTCAGACGCATTTCAGGAGTATAGAC
TGATGACGGNANGTGAGTGTGCCGTTAGNTGGATCGNCGCNGTNCNANGT
ATACGACTGTCTCTGCCCATGCTCGATCATGTTACTCGNATATTNCCTGG
GCAGCCAGCANCCTGTCAGNTGATANTNCATGCATACACATTCGCCANCC
ATGCAGTACTTTACTACANACGACCTTAGATGACTATAGGATGCGCACGG
TCCACTNACTAATCTNATGANCTAGTNCTACNACGCGATANTNATCTGCN
GTCTCACGTCACGCTAGNACATNGTACGATACGNCGNNCGACATCTCTAT
TAGTCGCCAGTACAGCTGTCCCTCTCGACTCTTNGATGTCTGTAACNTGN
TTGCNCNTGNGTGCGCATGACGCTTAGCTACGACGTGCAGCCGTGAAAAN
GATCTGNNCTCCCGGANGTAGTTAGTNGTGGTAGACGCGNCGCATCGGTA
ACNTATCCANGACGNTCGANCGCGACGATAGANCTNGCNGNTGNTG
NCCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCGCAAAACAGCTATACAGATAGATAGGNGACA
GACAGACAGACAGACAATAGATAAAACCAAAATTAATGTACATTTTAGGC
TTGATTGCTTTTTAGTCATAGTTACTTAAAACTATCACCCAATATTCTAA
AAATGTATTTCCTAAAATGCTTGCTTCTTTTAGTATCAATTAAAACTATA
AAAATATTTCAACAATCATATATATGTTTTAAAATGTGTCAAAGATGAAT
AACACTTTTCCTAGTTACATGTTTTTTTATAGTGCTTAATATGTTCAGGT
GACTTTGAAGTTTTAAGTGTTACAACATGCCAATTTCCAACATACATTTT
AGAGGAATGTCATTTTTTTTCACAAATATATAAATGAACAATTTCAGAAG
ATGAACATCTTTTCTGAGAAGTTGCTCAAGAATAGTCAAGCGAAGTAGAT
TCTGCTTCATGCTTTTAAATATCTTCATGCTTTTAAAGGCCCTACTTTTA
AAGAATACCACGTTGTGAATTTTTCAGACAAAAGATTTTATAGTTGTTTG
AATCATATTAAAAGCTGATTTTTAAATACTTATTTGTGAGTATGTGTCTG
TGCCTGTGCATGTCTTGTTTGTGTAGCGGCTAGAGAGGCCAGAAGAATGC
CACAAATCTCCCAAAGAAGCAGTTACAGGAAGTTGTGAGCCATCAGTTAT
GGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_p12.g1 MSMg01no401_p12.g1 CHROMAT_FILE:
MSMg01no401_p12.g1 PHD_FILE: MSMg01no401_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:43 2005
         (285 letters)



>mm_chr13_80500417_80501102
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%), Gaps = 1/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgccaatttccaacatacattttagaggaatgtcattttttttcacaaatatataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgccaatttccaacatacattttagaggaatgtcattttttttcacaaatatataaat 260

                                                                       
Query: 61  gaacaatttcagaagatgaacatcttttctgagaagttgctcaagaatagtcaagcgaag 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaatttcagaagatgaacatcttttctgagaagttgctcaagaatagtcaagcgaag 320

                                                                       
Query: 121 tagattctgcttcatgcttttaaatatcttcatgcttttaaaggccctacttttaaaga- 179
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 321 tagattctgcttcatgcttttaaatatcttcaggcttttaaaggccctacttttaaagat 380

                                                                       
Query: 180 ataccacgttgtgaatttttcagacaaaagattttatagttgtttgaatcatattaaaag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataccacgttgtgaatttttcagacaaaagattttatagttgtttgaatcatattaaaag 440

                                                         
Query: 240 ctgatttttaaatacttatttgtgagtatgtgtctgtgcctgtgca 285
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgatttttaaatacttatttgtgagtatgtgtctgtgcctgtgca 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space:   186852
Effective search space used:   186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)