BAC Information

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BAC

Clone NameMSMg01-402A22
Chromosome13 (Build37)
Map Location 96,254,455 - 96,254,828
singlet/doubletsinglet
Overlap genenone
Upstream geneAp3b1, Tbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z
Downstream geneF2rl1, F2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402A22.T7 (MSMg01no402_a22.b1)MSMg01-402A22.TJ (MSMg01no402_a22.g1)
ACCAG501296AG501297
length739751
length of high quality
(start - end)
440 (75 - 514)374 (78 - 451)
definitionCHROMAT_FILE: MSMg01no402_a22.b1 PHD_FILE: MSMg01no402_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:50 2005CHROMAT_FILE: MSMg01no402_a22.g1 PHD_FILE: MSMg01no402_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCTCAACTGTTGCCTACCGAATGGCTGAGAAGTACCTAAAAAAA
AAAAAAATGTTCAATATCCTTAGTCATCAGGGAAATGTAAATTAAAACAA
CCCTGAGATTCCACTTCACACCAGTCAGAATGGTTAAGATCAAAAACTCA
GGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAATACTCCTCCA
CTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGC
GGTTCCTCAGAAAATTGAACATATTAATACCTGTGGACCCAGCAATACTA
CTCCTGGGCATATACCCAGAAGATTCTCCAATATGTAATAATGACACATG
CTCCAGTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGTCCCTTAACAGAGGAATGGATTCAGAAAATGTGGTACATT
TACAAAATGGAGTACTACTCAGCTATTATGAATTCATGAAATCCTTACGC
AAATGGATAGAACTAGACAATATCATCCTGAGTGAAGTAACCCAATCACA
AAAGAACACATATGATATGCACTCCCTGATAAGTGGATATTAACCCAGAA
GCTTGTAATACCCAAGATACAATTCTCAGACCACATAAAGCTCTAGAAGA
AGGGAAGACCCAAGTGNGGATACTTTGATTCCTCCTAGA
NCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAGATCTCCACTTAGGCGCA
GCTGAATTTGTGACTTCATCCAGAAAGAATTTCAGGGCAAGATGGCATAA
AGGAGCTGGAATTTATTCAAGGGATTTAAGAGGTTCTCAGGGAAAGCATA
AGACACATCCAAGACCAGGATTGTGAGCCTCTCAAGAGGGACTCTTGTAA
CAGTAGCATATATGCAGTAGTATATATGAAGTATATGTAGCATATATGTA
GTAATGTATATGAAGAATATGTAGCATATATGTAGTAACAATGGCACATG
TGGTTTGGTGGCTTTCAAGTCACATCTCAGATGGCTTCTAAGAAACTTTC
TCCCCACTCTTTCCCTCTTTTTCTAGTAAGAGTATAAGGTCGCCCTGCAG
GTGCGTGGATTATAATCTGATAAAATAAAACTATGAGCCCAAGAGTTGCC
AGAGGGAGTTAAGACGGGTGTTTTATTGCAAATGGGGTTTCTTGTGAGGT
TTCTTGAAAATTGTACGCTTGCATCTGGGAAAGGAGAAACCACCTTATAC
ACTCCCGTTGGAAGCATGCGTTGGTGTTATCTTAAAACTCTCCCCTGACA
CTTTCCCCCCCAAGAGGATAATGGGCTCCTGTACCTTATTCTTCCCATCT
GTCTGTATGTATGATCCTGATAATTCTCGCACCTTCCTCCCTCTCTCTTC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_a22.g1 MSMg01no402_a22.g1 CHROMAT_FILE:
MSMg01no402_a22.g1 PHD_FILE: MSMg01no402_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:50 2005
         (374 letters)



>mm_chr13_96254255_96255028
          Length = 774

 Score =  723 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacagatctccacttaggcgcagctgaatttgtgacttcatccagaaagaatttcaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tcacagatctccacttaggcgcagctgaatttgtgacttcatccagaaagaatttcaggg 515

                                                                       
Query: 61  caagatggcataaaggagctggaatttattcaagggatttaagaggttctcagggaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 caagatggcataaaggagctggaatttattcaagggatttaagaggttctcagggaaagc 455

                                                                       
Query: 121 ataagacacatccaagaccaggattgtgagcctctcaagagggactcttgtaacagtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ataagacacatccaagaccaggattgtgagcctctcaagagggactcttgtaacagtagc 395

                                                                       
Query: 181 atatatgcagtagtatatatgaagtatatgtagcatatatgtagtaatgtatatgaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atatatgcagtagtatatatgaagtatatgtagcatatatgtagtaatgtatatgaagaa 335

                                                                       
Query: 241 tatgtagcatatatgtagtaacaatggcacatgtggtttggtggctttcaagtcacatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tatgtagcatatatgtagtaacaatggcacatgtggtttggtggctttcaagtcacatct 275

                                                                       
Query: 301 cagatggcttctaagaaactttctccccactctttccctctttttctagtaagagtataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cagatggcttctaagaaactttctccccactctttccctctttttctagtaagagtataa 215

                         
Query: 361 ggtcgccctgcagg 374
           ||||||||||||||
Sbjct: 214 ggtcgccctgcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)