BAC Information

Click to search

BAC

Clone NameMSMg01-402H08
Chromosome13 (Build37)
Map Location 77,662,455 - 77,662,723
singlet/doubletsinglet
Overlap genenone
Upstream geneMctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
Downstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402H08.T7 (MSMg01no402_h08.b1)MSMg01-402H08.TJ (MSMg01no402_h08.g1)
ACCAG501600AG501601
length762754
length of high quality
(start - end)
269 (47 - 315)567 (73 - 639)
definitionCHROMAT_FILE: MSMg01no402_h08.b1 PHD_FILE: MSMg01no402_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:21 2005CHROMAT_FILE: MSMg01no402_h08.g1 PHD_FILE: MSMg01no402_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATATATAGTACCTGTGTATATATGTATATGTGTGTACCACAATTCTTTAT
CTTGGTGTAATAATAGTATTCTATTTCTGTATGAATTTCAAGATAATAGT
ATTTAGTTCAATATTACAGTTTTAAAATGCATGCCACTGACAATGCATAT
TTTTTAATGGTAAGGCCTTTTATTCTTACCAGCTTCTTTCCTTATGTTGT
GTTATTTACACCAAATATAAAATAATATAAAAACAATGTACAGTTACCTG
AAGCTGCATCTTCACTCTTCTTATAAAATAGAGAATTAAAATATATGATT
AAGTGTAAAATATTTTGGACAGAGGTTGAGATACTTTAAAGATACTTTAA
TTCTGCAATGTTTGAATAATTGTTTCATACTCCCCTCCTTTGTGTATACA
TAGTAATAGAGGAAAAAAACTTGTGAAATGTTCATGTTTTCCTCTTGTGT
CAACATAGATATGTCATAATATTTTTTGTTTTATGGCGCTCATTTCCAGT
TAATGCAGAATTTTAAAGTGAAGATAATCTCAATAATTAAGGAGTAAATG
TGTAAATGAGAGATGATTTGAGTTATTTAATTAACATAGATTCATGGAAA
TTTGTCAACTAGAGAATTAAAATATGGATTTTAATTTAACCTGCCCCCTA
CTTTCCACTTCTCCTACACCATCACCAAATAAAAGGGCAAATAACCCCAA
ATTTACCATGTT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAATAGAGAAATGTCAAATAGCTGAGA
AACACTTAAACGTTCAACATGCCTAACCATCGGGAATGAAAATCAAAATT
ACTTCGAGATTCCATCTTACGTTTGTCAGAATGGCTAAGATCAGTAGCAC
AAATGACAGCTTATGCTACTGCGGATATAGAGCAAGGGGAGCACTCCTCC
TTGCTGGTGTGAATGCAAACTCATATAGCCACTATGGAAATCAGTATGTC
AGTTCCTCAGAAACTGTTTTTTCACTCTACCTCAAGACCCAGCTATACTT
CTTGACTATATACCCAAAGGACATTCCATCCTACTATAAGGACACTTGCT
CAACTATGTTCAATGTGGCTTTATTCATAATATCCATAACCTGGGAACAA
CCTAGATGAATAAAATGTGGTACATTTACACAACAGAAATTACTCAGCTA
TTTAAAAAAGTAACATCATAAAATTTGTAGACAAATGAATAGAATTAGAA
AAATCATCCTGAGTGAGATAACCCAAACAGAATGATATATGATATGTATT
CACTTAGAAAGGGCTATTACCCATTAAGCAAATGATAACCAAACTATAAT
CTTATGTCCAGAGAGGTTACTTATACAGACAGGAACTAAGGGGAGGGAAC
ACCAGGATCTTTCTGGGAAGAGATAATTAGAATAGATTTTATAGAGACTG
GATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_h08.b1 MSMg01no402_h08.b1 CHROMAT_FILE:
MSMg01no402_h08.b1 PHD_FILE: MSMg01no402_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:21 2005
         (269 letters)



>mm_chr13_77662255_77662923
          Length = 669

 Score =  501 bits (259), Expect = e-146
 Identities = 267/271 (98%), Gaps = 4/271 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcatatatag--tacctgtgtatatatgtatatgtgtgtaccacaattctttatcttg 58
           ||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcatatatagcata--tgtgtatatatgtatatgtgtgtaccacaattctttatcttg 258

                                                                       
Query: 59  gtgtaataatagtattctatttctgtatgaatttcaagataatagtatttagttcaatat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtgtaataatagtattctatttctgtatgaatttcaagataatagtatttagttcaatat 318

                                                                       
Query: 119 tacagttttaaaatgcatgccactgacaatgcatattttttaatggtaaggccttttatt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tacagttttaaaatgcatgccactgacaatgcatattttttaatggtaaggccttttatt 378

                                                                       
Query: 179 cttaccagcttctttccttatgttgtgttatttacaccaaatataaaataatataaaaac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttaccagcttctttccttatgttgtgttatttacaccaaatataaaataatataaaaac 438

                                          
Query: 239 aatgtacagttacctgaagctgcatcttcac 269
           |||||||||||||||||||||||||||||||
Sbjct: 439 aatgtacagttacctgaagctgcatcttcac 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)